Literature DB >> 28375735

Single-Molecule Studies of Telomeres and Telomerase.

Joseph W Parks1,2, Michael D Stone1,3.   

Abstract

Telomeres are specialized chromatin structures that protect chromosome ends from dangerous processing events. In most tissues, telomeres shorten with each round of cell division, placing a finite limit on cell growth. In rapidly dividing cells, including the majority of human cancers, cells bypass this growth limit through telomerase-catalyzed maintenance of telomere length. The dynamic properties of telomeres and telomerase render them difficult to study using ensemble biochemical and structural techniques. This review describes single-molecule approaches to studying how individual components of telomeres and telomerase contribute to function. Single-molecule methods provide a window into the complex nature of telomeres and telomerase by permitting researchers to directly visualize and manipulate the individual protein, DNA, and RNA molecules required for telomere function. The work reviewed in this article highlights how single-molecule techniques have been utilized to investigate the function of telomeres and telomerase.

Entities:  

Keywords:  single-molecule biophysics; telomerase; telomere

Mesh:

Substances:

Year:  2017        PMID: 28375735      PMCID: PMC5624789          DOI: 10.1146/annurev-biophys-062215-011256

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  126 in total

1.  The Stability of Broken Ends of Chromosomes in Zea Mays.

Authors:  B McClintock
Journal:  Genetics       Date:  1941-03       Impact factor: 4.562

2.  Pyrimidine motif triple helix in the Kluyveromyces lactis telomerase RNA pseudoknot is essential for function in vivo.

Authors:  Darian D Cash; Osnat Cohen-Zontag; Nak-Kyoon Kim; Kinneret Shefer; Yogev Brown; Nikolai B Ulyanov; Yehuda Tzfati; Juli Feigon
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-17       Impact factor: 11.205

3.  Roles for RNA in telomerase nucleotide and repeat addition processivity.

Authors:  Cary K Lai; Michael C Miller; Kathleen Collins
Journal:  Mol Cell       Date:  2003-06       Impact factor: 17.970

4.  Telomeric overhang length determines structural dynamics and accessibility to telomerase and ALT-associated proteins.

Authors:  Helen Hwang; Alex Kreig; Jacob Calvert; Justin Lormand; Yongho Kwon; James M Daley; Patrick Sung; Patricia L Opresko; Sua Myong
Journal:  Structure       Date:  2014-05-15       Impact factor: 5.006

5.  The telomerase essential N-terminal domain promotes DNA synthesis by stabilizing short RNA-DNA hybrids.

Authors:  Benjamin M Akiyama; Joseph W Parks; Michael D Stone
Journal:  Nucleic Acids Res       Date:  2015-05-04       Impact factor: 16.971

6.  Coordinated DNA dynamics during the human telomerase catalytic cycle.

Authors:  Joseph W Parks; Michael D Stone
Journal:  Nat Commun       Date:  2014-06-13       Impact factor: 14.919

7.  Single-molecule analysis of thymine dimer-containing G-quadruplexes formed from the human telomere sequence.

Authors:  Anna H Wolna; Aaron M Fleming; Cynthia J Burrows
Journal:  Biochemistry       Date:  2014-11-26       Impact factor: 3.162

8.  G-quadruplex DNA bound by a synthetic ligand is highly dynamic.

Authors:  Prakrit V Jena; Pravin S Shirude; Burak Okumus; Katta Laxmi-Reddy; Frédéric Godde; Ivan Huc; Shankar Balasubramanian; Taekjip Ha
Journal:  J Am Chem Soc       Date:  2009-09-09       Impact factor: 15.419

9.  A single-molecule assay for telomerase structure-function analysis.

Authors:  John Y Wu; Michael D Stone; Xiaowei Zhuang
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

10.  Structure of active dimeric human telomerase.

Authors:  Anselm Sauerwald; Sara Sandin; Gaël Cristofari; Sjors H W Scheres; Joachim Lingner; Daniela Rhodes
Journal:  Nat Struct Mol Biol       Date:  2013-03-10       Impact factor: 15.369

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  10 in total

Review 1.  Structural biology of telomerase and its interaction at telomeres.

Authors:  Yaqiang Wang; Juli Feigon
Journal:  Curr Opin Struct Biol       Date:  2017-07-18       Impact factor: 6.809

Review 2.  Telomerase structures and regulation: shedding light on the chromosome end.

Authors:  Thi Hoang Duong Nguyen; Kathleen Collins; Eva Nogales
Journal:  Curr Opin Struct Biol       Date:  2019-06-12       Impact factor: 6.809

3.  The dynamics of forming a triplex in an artificial telomere inferred by DNA mechanics.

Authors:  Ning Li; Junli Wang; Kangkang Ma; Lin Liang; Lipei Mi; Wei Huang; Xiaofeng Ma; Zeyu Wang; Wei Zheng; Linyan Xu; Jun-Hu Chen; Zhongbo Yu
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

Review 4.  Life under the Microscope: Single-Molecule Fluorescence Highlights the RNA World.

Authors:  Sujay Ray; Julia R Widom; Nils G Walter
Journal:  Chem Rev       Date:  2018-01-24       Impact factor: 60.622

Review 5.  New perspectives on telomerase RNA structure and function.

Authors:  Cherie Musgrove; Linnea I Jansson; Michael D Stone
Journal:  Wiley Interdiscip Rev RNA       Date:  2017-11-09       Impact factor: 9.957

6.  Catalysis-dependent inactivation of human telomerase and its reactivation by intracellular telomerase-activating factors (iTAFs).

Authors:  Mohammed E Sayed; Ao Cheng; Gaya P Yadav; Andrew T Ludlow; Jerry W Shay; Woodring E Wright; Qiu-Xing Jiang
Journal:  J Biol Chem       Date:  2019-06-11       Impact factor: 5.157

7.  Hidden Structural Modules in a Cooperative RNA Folding Transition.

Authors:  Brant Gracia; Hashim M Al-Hashimi; Namita Bisaria; Rhiju Das; Daniel Herschlag; Rick Russell
Journal:  Cell Rep       Date:  2018-03-20       Impact factor: 9.423

Review 8.  Characterization of G-Quadruplexes Folding/Unfolding Dynamics and Interactions with Proteins from Single-Molecule Force Spectroscopy.

Authors:  Yuanlei Cheng; Yashuo Zhang; Huijuan You
Journal:  Biomolecules       Date:  2021-10-25

9.  Single-Molecule Mechanical Analysis of Strand Invasion in Human Telomere DNA.

Authors:  Terren R Chang; Xi Long; Shankar Shastry; Joseph W Parks; Michael D Stone
Journal:  Biochemistry       Date:  2022-07-19       Impact factor: 3.321

10.  Prognostic value and potential molecular mechanism of the like-Sm gene family in early-stage pancreatic ductal adenocarcinoma.

Authors:  Zijun Chen; Chuangye Han; Xin Zhou; Xiangkun Wang; Xiwen Liao; Yongfei He; Shutian Mo; Xuan Li; Guangzhi Zhu; Xinping Ye; Tao Peng
Journal:  Transl Cancer Res       Date:  2021-04       Impact factor: 1.241

  10 in total

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