Literature DB >> 28375733

Single-Molecule Analysis of Bacterial DNA Repair and Mutagenesis.

Stephan Uphoff1, David J Sherratt1.   

Abstract

Ubiquitous conserved processes that repair DNA damage are essential for the maintenance and propagation of genomes over generations. Then again, inaccuracies in DNA transactions and failures to remove mutagenic lesions cause heritable genome changes. Building on decades of research using genetics and biochemistry, unprecedented quantitative insight into DNA repair mechanisms has come from the new-found ability to measure single proteins in vitro and inside individual living cells. This has brought together biologists, chemists, engineers, physicists, and mathematicians to solve long-standing questions about the way in which repair enzymes search for DNA lesions and form protein complexes that act in DNA repair pathways. Furthermore, unexpected discoveries have resulted from capabilities to resolve molecular heterogeneity and cell subpopulations, provoking new questions about the role of stochastic processes in DNA repair and mutagenesis. These studies are leading to new technologies that will find widespread use in basic research, biotechnology, and medicine.

Entities:  

Keywords:  DNA repair; atomic force microscopy; mutagenesis; single-molecule fluorescence; single-molecule force spectroscopy; super-resolution microscopy

Mesh:

Substances:

Year:  2017        PMID: 28375733     DOI: 10.1146/annurev-biophys-070816-034106

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  10 in total

Review 1.  Rescuing Replication from Barriers: Mechanistic Insights from Single-Molecule Studies.

Authors:  Bo Sun
Journal:  Mol Cell Biol       Date:  2019-04-30       Impact factor: 4.272

Review 2.  Molecular mechanisms and genomic maps of DNA excision repair in Escherichia coli and humans.

Authors:  Jinchuan Hu; Christopher P Selby; Sheera Adar; Ogun Adebali; Aziz Sancar
Journal:  J Biol Chem       Date:  2017-08-10       Impact factor: 5.157

3.  Real-time dynamics of mutagenesis reveal the chronology of DNA repair and damage tolerance responses in single cells.

Authors:  Stephan Uphoff
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-25       Impact factor: 11.205

Review 4.  The mechanisms underlying antigenic variation and maintenance of genomic integrity in Mycoplasma pneumoniae and Mycoplasma genitalium.

Authors:  Mohamad S Hakim; Luthvia Annisa; Rizka O A Jariah; Cornelis Vink
Journal:  Arch Microbiol       Date:  2020-09-24       Impact factor: 2.552

Review 5.  The journey of a molecular detective.

Authors:  David Sherratt
Journal:  Heredity (Edinb)       Date:  2019-06-12       Impact factor: 3.821

Review 6.  Single-molecule studies of helicases and translocases in prokaryotic genome-maintenance pathways.

Authors:  Kelsey S Whinn; Antoine M van Oijen; Harshad Ghodke
Journal:  DNA Repair (Amst)       Date:  2021-09-20

7.  A Quantitative Model Explains Single-Cell Dynamics of the Adaptive Response in Escherichia coli.

Authors:  Stephan Uphoff
Journal:  Biophys J       Date:  2019-08-15       Impact factor: 4.033

8.  Choosing the right label for single-molecule tracking in live bacteria: side-by-side comparison of photoactivatable fluorescent protein and Halo tag dyes.

Authors:  Nehir Banaz; Jarno Mäkelä; Stephan Uphoff
Journal:  J Phys D Appl Phys       Date:  2018-12-06       Impact factor: 3.207

Review 9.  Bacterial phenotypic heterogeneity in DNA repair and mutagenesis.

Authors:  Maxence S Vincent; Stephan Uphoff
Journal:  Biochem Soc Trans       Date:  2020-04-29       Impact factor: 5.407

Review 10.  Structures and stability of simple DNA repeats from bacteria.

Authors:  Vaclav Brazda; Miroslav Fojta; Richard P Bowater
Journal:  Biochem J       Date:  2020-01-31       Impact factor: 3.857

  10 in total

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