Literature DB >> 28365837

Comparison of phytohormone levels and transcript profiles during seasonal dormancy transitions in underground adventitious buds of leafy spurge.

Wun S Chao1, Münevver Doğramacı2, David P Horvath2, James V Anderson2, Michael E Foley2.   

Abstract

Leafy spurge (Euphorbia esula L.) is an herbaceous perennial weed that maintains its perennial growth habit through generation of underground adventitious buds (UABs) on the crown and lateral roots. These UABs undergo seasonal phases of dormancy under natural conditions, namely para-, endo-, and ecodormancy in summer, fall, and winter, respectively. These dormancy phases can also be induced in growth chambers by manipulating photoperiod and temperature. In this study, UABs induced into the three phases of dormancy under controlled conditions were used to compare changes in phytohormone and transcriptome profiles. Results indicated that relatively high levels of ABA, the ABA metabolite PA, and IAA were found in paradormant buds. When UABs transitioned from para- to endodormancy, ABA and PA levels decreased, whereas IAA levels were maintained. Additionally, transcript profiles associated with regulation of soluble sugars and ethylene activities were also increased during para- to endodormancy transition, which may play some role in maintaining endodormancy status. When crown buds transitioned from endo- to ecodormancy, the ABA metabolites PA and DPA decreased significantly along with the down-regulation of ABA biosynthesis genes, ABA2 and NCED3. IAA levels were also significantly lower in ecodormant buds than that of endodormant buds. We hypothesize that extended cold treatment may trigger physiological stress in endodormant buds, and that these stress-associated signals induced the endo- to ecodormancy transition and growth competence. The up-regulation of NAD/NADH phosphorylation and dephosphorylation pathway, and MAF3-like and GRFs genes, may be considered as markers of growth competency.

Entities:  

Keywords:  Dormancy; Hormone profiling; Leafy spurge; RNAseq

Mesh:

Substances:

Year:  2017        PMID: 28365837     DOI: 10.1007/s11103-017-0607-7

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  85 in total

1.  De novo assembly and analysis of RNA-seq data.

Authors:  Gordon Robertson; Jacqueline Schein; Readman Chiu; Richard Corbett; Matthew Field; Shaun D Jackman; Karen Mungall; Sam Lee; Hisanaga Mark Okada; Jenny Q Qian; Malachi Griffith; Anthony Raymond; Nina Thiessen; Timothee Cezard; Yaron S Butterfield; Richard Newsome; Simon K Chan; Rong She; Richard Varhol; Baljit Kamoh; Anna-Liisa Prabhu; Angela Tam; YongJun Zhao; Richard A Moore; Martin Hirst; Marco A Marra; Steven J M Jones; Pamela A Hoodless; Inanc Birol
Journal:  Nat Methods       Date:  2010-10-10       Impact factor: 28.547

2.  The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance.

Authors:  Charles Wang; Binsheng Gong; Pierre R Bushel; Jean Thierry-Mieg; Danielle Thierry-Mieg; Joshua Xu; Hong Fang; Huixiao Hong; Jie Shen; Zhenqiang Su; Joe Meehan; Xiaojin Li; Lu Yang; Haiqing Li; Paweł P Łabaj; David P Kreil; Dalila Megherbi; Stan Gaj; Florian Caiment; Joost van Delft; Jos Kleinjans; Andreas Scherer; Viswanath Devanarayan; Jian Wang; Yong Yang; Hui-Rong Qian; Lee J Lancashire; Marina Bessarabova; Yuri Nikolsky; Cesare Furlanello; Marco Chierici; Davide Albanese; Giuseppe Jurman; Samantha Riccadonna; Michele Filosi; Roberto Visintainer; Ke K Zhang; Jianying Li; Jui-Hua Hsieh; Daniel L Svoboda; James C Fuscoe; Youping Deng; Leming Shi; Richard S Paules; Scott S Auerbach; Weida Tong
Journal:  Nat Biotechnol       Date:  2014-08-24       Impact factor: 54.908

Review 3.  A DELLAcate balance: the role of gibberellin in plant morphogenesis.

Authors:  Christine M Fleet; Tai-ping Sun
Journal:  Curr Opin Plant Biol       Date:  2005-02       Impact factor: 7.834

4.  Using the iPlant collaborative discovery environment.

Authors:  Shannon L Oliver; Andrew J Lenards; Roger A Barthelson; Nirav Merchant; Sheldon J McKay
Journal:  Curr Protoc Bioinformatics       Date:  2013-06

5.  EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments.

Authors:  Ning Leng; John A Dawson; James A Thomson; Victor Ruotti; Anna I Rissman; Bart M G Smits; Jill D Haag; Michael N Gould; Ron M Stewart; Christina Kendziorski
Journal:  Bioinformatics       Date:  2013-02-21       Impact factor: 6.937

6.  The Arabidopsis aldehyde oxidase 3 (AAO3) gene product catalyzes the final step in abscisic acid biosynthesis in leaves.

Authors:  M Seo; A J Peeters; H Koiwai; T Oritani; A Marion-Poll; J A Zeevaart; M Koornneef; Y Kamiya; T Koshiba
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-07       Impact factor: 11.205

7.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

8.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

9.  The Arabidopsis MAX pathway controls shoot branching by regulating auxin transport.

Authors:  Tom Bennett; Tobias Sieberer; Barbara Willett; Jon Booker; Christian Luschnig; Ottoline Leyser
Journal:  Curr Biol       Date:  2006-03-21       Impact factor: 10.834

10.  MAF2 Is Regulated by Temperature-Dependent Splicing and Represses Flowering at Low Temperatures in Parallel with FLM.

Authors:  Chiara A Airoldi; Mary McKay; Brendan Davies
Journal:  PLoS One       Date:  2015-05-08       Impact factor: 3.240

View more
  9 in total

1.  The regulatory mechanism of chilling-induced dormancy transition from endo-dormancy to non-dormancy in Polygonatum kingianum Coll.et Hemsl rhizome bud.

Authors:  Yue Wang; Xiaoqing Liu; He Su; Shikai Yin; Caixia Han; Dandan Hao; Xuehui Dong
Journal:  Plant Mol Biol       Date:  2019-01-09       Impact factor: 4.076

2.  Comparative Study on Physiological Responses and Gene Expression of Bud Endodormancy Release Between Two Herbaceous Peony Cultivars (Paeonia lactiflora Pall.) With Contrasting Chilling Requirements.

Authors:  Xiaobin Wang; Runlong Zhang; Qiaoyu Huang; Xiaohua Shi; Danqing Li; Lingmei Shao; Tong Xu; David P Horvath; Yiping Xia; Jiaping Zhang
Journal:  Front Plant Sci       Date:  2022-02-02       Impact factor: 5.753

3.  Hybrid RNA Sequencing Strategy for the Dynamic Transcriptomes of Winter Dormancy in an Evergreen Herbaceous Perennial, Iris japonica.

Authors:  Danqing Li; Lingmei Shao; Tong Xu; Xiaobin Wang; Runlong Zhang; Kaijing Zhang; Yiping Xia; Jiaping Zhang
Journal:  Front Genet       Date:  2022-03-16       Impact factor: 4.599

4.  Transient induction of a subset of ethylene biosynthesis genes is potentially involved in regulation of grapevine bud dormancy release.

Authors:  Zhaowan Shi; Tamar Halaly-Basha; Chuanlin Zheng; Mira Weissberg; Ron Ophir; David W Galbraith; Xuequn Pang; Etti Or
Journal:  Plant Mol Biol       Date:  2018-11-03       Impact factor: 4.076

Review 5.  Bud endodormancy in deciduous fruit trees: advances and prospects.

Authors:  Qinsong Yang; Yuhao Gao; Xinyue Wu; Takaya Moriguchi; Songling Bai; Yuanwen Teng
Journal:  Hortic Res       Date:  2021-06-01       Impact factor: 6.793

Review 6.  Bud Dormancy in Perennial Fruit Tree Species: A Pivotal Role for Oxidative Cues.

Authors:  Rémi Beauvieux; Bénédicte Wenden; Elisabeth Dirlewanger
Journal:  Front Plant Sci       Date:  2018-05-16       Impact factor: 5.753

Review 7.  Modulation of Dormancy and Growth Responses in Reproductive Buds of Temperate Trees.

Authors:  Alba Lloret; María Luisa Badenes; Gabino Ríos
Journal:  Front Plant Sci       Date:  2018-09-13       Impact factor: 5.753

8.  From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy.

Authors:  Noémie Vimont; Mathieu Fouché; José Antonio Campoy; Meixuezi Tong; Mustapha Arkoun; Jean-Claude Yvin; Philip A Wigge; Elisabeth Dirlewanger; Sandra Cortijo; Bénédicte Wenden
Journal:  BMC Genomics       Date:  2019-12-12       Impact factor: 3.969

9.  Integrative Identification of Crucial Genes Associated With Plant Hormone-Mediated Bud Dormancy in Prunus mume.

Authors:  Ping Li; Tangchun Zheng; Zhiyong Zhang; Weichao Liu; Like Qiu; Jia Wang; Tangren Cheng; Qixiang Zhang
Journal:  Front Genet       Date:  2021-07-06       Impact factor: 4.599

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.