Literature DB >> 28365756

node.dating: dating ancestors in phylogenetic trees in R.

Bradley R Jones1,2, Art F Y Poon2,3,4.   

Abstract

Summary: Phylogenetic trees encode the evolutionary distances between species or populations. With sufficient information, these evolutionary distances can be rescaled over time to provide estimates of the dates of the most recent ancestors of the species. Here we present the R program node.dating, divergence-time analysis software, which uses a maximum-likelihood method to estimate the dates of the internal nodes of a phylogenetic tree. Availability and Implementation: node.dating is available as a part of the R v3.30 package ape v4.0 (cran.r-project.org). node.dating is also available in the GitHub repository: https://github.com/brj1/node.dating , along with supplementary software and tests. Contact: brj1@sfu.ca. Supplementary information: Supplementary data are available at Bioinformatics online.
© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Mesh：

Year:  2017        PMID： 28365756      PMCID： PMC5860581          DOI： 10.1093/bioinformatics/btw744

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


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