Literature DB >> 28362490

Convergence of Computed Aqueous Absorption Spectra with Explicit Quantum Mechanical Solvent.

Joel M Milanese1, Makenzie R Provorse1, Enrique Alameda1, Christine M Isborn1.   

Abstract

For reliable condensed phase simulations, an accurate model that includes both short- and long-range interactions is required. Short- and long-range interactions can be particularly strong in aqueous solution, where hydrogen-bonding may play a large role at short range and polarization may play a large role at long range. Although short-range solute-solvent interactions such as charge transfer, hydrogen bonding, and solute-solvent polarization can be taken into account with a quantum mechanical (QM) treatment of the solvent, it is unclear how much QM solvent is necessary to accurately model interactions with different solutes. In this work, we investigate the effect of explicit QM solvent on absorption spectra computed for a series of solutes with decreasing polarity. By adjusting the boundary between QM and classical molecular mechanical solvent to include up to 400 QM water molecules, convergence of the calculated absorption spectra with respect to the size of the QM region is achieved. We find that the rate of convergence does not correlate with solute polarity when excitation energies are calculated using time-dependent density functional theory with a range-separated hybrid functional, but it does correlate with solute polarity when using configuration interaction singles. We also find that larger basis sets converge the computed spectrum with fewer QM solvent molecules. To optimize the computational cost with respect to convergence, we test a mixed basis set with more basis functions for atoms of the chromophore and the solvent molecules that are nearest to it and fewer basis functions for the atoms of the remaining solvent molecules in the QM region. Our results show that using a mixed basis set is a potentially effective way to significantly lower the computational cost while reproducing the results computed with larger basis sets.

Entities:  

Year:  2017        PMID: 28362490     DOI: 10.1021/acs.jctc.7b00159

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  6 in total

1.  Revealing quantum mechanical effects in enzyme catalysis with large-scale electronic structure simulation.

Authors:  Zhongyue Yang; Rimsha Mehmood; Mengyi Wang; Helena W Qi; Adam H Steeves; Heather J Kulik
Journal:  React Chem Eng       Date:  2018-11-29       Impact factor: 4.239

2.  Large-scale QM/MM free energy simulations of enzyme catalysis reveal the influence of charge transfer.

Authors:  Heather J Kulik
Journal:  Phys Chem Chem Phys       Date:  2018-08-08       Impact factor: 3.676

3.  Do Better Quality Embedding Potentials Accelerate the Convergence of QM/MM Models? The Case of Solvated Acid Clusters.

Authors:  Junming Ho; Yihan Shao; Jin Kato
Journal:  Molecules       Date:  2018-09-26       Impact factor: 4.411

4.  Assessing Configurational Sampling in the Quantum Mechanics/Molecular Mechanics Calculation of Temoporfin Absorption Spectrum and Triplet Density of States.

Authors:  Martina De Vetta; Omar Baig; Dorika Steen; Juan J Nogueira; Leticia González
Journal:  Molecules       Date:  2018-11-09       Impact factor: 4.411

5.  Fragment-Based Quantum Mechanical Calculation of Excited-State Properties of Fluorescent RNAs.

Authors:  Chenfei Shen; Xianwei Wang; Xiao He
Journal:  Front Chem       Date:  2021-12-22       Impact factor: 5.221

6.  Modeling Excited-State Proton Transfer to Solvent: A Dynamics Study of a Super Photoacid with a Hybrid Implicit/Explicit Solvent Model.

Authors:  Umberto Raucci; Maria Gabriella Chiariello; Nadia Rega
Journal:  J Chem Theory Comput       Date:  2020-10-28       Impact factor: 6.006

  6 in total

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