| Literature DB >> 28361965 |
Xu Song1, Zhenzhen Chen1, Renyong Jia1, Mei Cao2, Yuanfeng Zou1, Lixia Li1, Xiaoxia Liang1, Lizi Yin1, Changliang He1, Guizhou Yue3, Zhongqiong Yin1.
Abstract
In our previous study, a new compound, octadecanoic acid-3, 4-tetrahydrofuran diester, possessing potent acaricidal activity was obtained from neem oil. This study performed RNA-seq transcriptomics and iTRAQ proteomics to uncover the acaricidal mechanism of the compound against Sarcoptes scabiei var. cuniculi. The results of transcriptomics indicated that after treatment with octadecanoic acid-3, 4-tetrahydrofuran diester, genes related to "Energy metabolism" were significantly up-/down-regulated, including citrate cycle, oxidative phosphorylation pathway and fatty acid metabolism. Proteomics analysis showed accordant changes of proteins related to oxidative phosphorylation pathway. The target proteins of the compound were NADH dehydrogenase, Ubiquinol-cytochrome c reductase, Cytochrome c oxidase, ATP synthase, enolase and superoxide dismutase. In transcriptomics-proteomics correlation analysis, the concordance rate between protein abundances and their corresponding mRNAs was 57%, while others (43%) were discordant changes, suggesting divergent regulating effects of octadecanoic acid-3, 4-tetrahydrofuran diester. These results suggested that the acaricidal mechanism of octadecanoic acid-3, 4-tetrahydrofuran diester attributed to interference with energy metabolism, especially oxidative phosphorylation pathway.Entities:
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Year: 2017 PMID: 28361965 PMCID: PMC5374447 DOI: 10.1038/srep45479
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1The structure of octadecanoic acid-3, 4 - tetrahydrofuran diester.
Figure 2The GO annotation of differentially expressed genes.
KEGG pathway annotation of differentially expressed genes.
| Pathway | DEGs with pathway annotation(6366) | P-value |
|---|---|---|
| Phagosome | 85(1.34%) | 1.44E-06 |
| Lysosome | 112(1.76%) | 1.57E-06 |
| Antigen processing and presentation | 48(0.75%) | 1.92E-05 |
| Thyroid hormone synthesis | 58(0.91%) | 0.000133610 |
| Protein digestion and absorption | 18(0.28%) | 0.000663957 |
| NOD-like receptor signaling pathway | 21(0.33%) | 0.000812845 |
| ECM-receptor interaction | 28(0.44%) | 0.001944168 |
| Proximal tubule bicarbonate reclamation | 11(0.17%) | 0.005283026 |
| Carbon fixation in photosynthetic organisms | 27(0.42%) | 0.008627603 |
| PI3K-Akt signaling pathway | 100(1.57%) | 0.009775528 |
| Estrogen signaling pathway | 70(1.10%) | 0.010183374 |
| Focal adhesion | 70(1.10%) | 0.013006902 |
| Carbon metabolism | 124(1.95%) | 0.016390223 |
| Synaptic vesicle cycle | 30(0.47%) | 0.016564238 |
| Fatty acid degradation | 50(0.79%) | 0.01661521 |
| Alanine, aspartate and glutamate metabolism | 31(0.49%) | 0.017463452 |
| Plant-pathogen interaction | 20(0.31%) | 0.019002489 |
| Collecting duct acid secretion | 16(0.25%) | 0.020214136 |
| Hematopoietic cell lineage | 7(0.11%) | 0.021354465 |
| Biosynthesis of amino acids | 81(1.27%) | 0.025924987 |
| Fatty acid metabolism | 67(1.05%) | 0.031310858 |
| Fat digestion and absorption | 15(0.24%) | 0.031332109 |
| Propanoate metabolism | 30(0.47%) | 0.034159996 |
| Mineral absorption | 6(0.09%) | 0.041050613 |
| Tight junction | 42(0.66%) | 0.043123628 |
| Hippo signaling pathway -fly | 43(0.68%) | 0.043563262 |
| Citrate cycle (TCA cycle) | 45(0.71%) | 0.044335969 |
| Retinol metabolism | 32(0.50%) | 0.049045750 |
| Oxidative phosphorylation | 62(0.97%) | 0.172722237 |
Figure 3Relative expression levels of selected eight genes related to oxidative phosphorylation pathway by quantitative real-time PCR.
Figure 4The GO annotation of differentially expressed proteins.
KEGG Pathway analysis of differentially expressed proteins.
| Pathway | Diff Proteins with pathway annotation(150) | Pathway ID |
|---|---|---|
| Basal transcription factors | 2(1.33%) | ko03022 |
| Collecting duct acid secretion | 3(2.00%) | ko04966 |
| Oxidative phosphorylation | 7(4.67%) | ko00190 |
| Lysosome | 6(4.00%) | ko04142 |
| RIG-I-like receptor signaling pathway | 1(0.67%) | ko04622 |
| Circadian rhythm - fly | 1(0.67%) | ko04711 |
| Synaptic vesicle cycle | 3(2.00%) | ko04721 |
| Propanoate metabolism | 3(2.00%) | ko00640 |
| Aminobenzoate degradation | 1(0.67%) | ko00627 |
| Glycosphingolipid biosynthesis - ganglio series | 1(0.67%) | ko00604 |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | 1(0.67%) | ko00563 |
| Base excision repair | 1(0.67%) | ko03410 |
| Styrene degradation | 1(0.67%) | ko00643 |
| DNA replication | 1(0.67%) | ko03030 |
| MAPK signaling pathway - yeast | 1(0.67%) | ko04011 |
Figure 5Correlation analysis between proteome and transcriptome.
Up and Down represent that the differentially expressed genes and corresponding changes of protein abundances were up- and down- regulated, respectively. Protein-up represents that the protein abundances were up-regulated, but their corresponding mRNAs was down-regulated. Protein-down represents that the protein abundances were down-regulated, but their corresponding mRNAs was up-regulated.
Figure 6The changes of oxidative phosphorylation pathway obtained by KEGG.
The subunit of each protein in green box represents down-regulation and in red box represents up-regulation.
The primers for quantitative real-time PCR.
| Gene | Forward Primer (5′-3′) | Reverse Primer (5′-3′) |
|---|---|---|
| GAPDH | TGCCGTGGGTGGAATCATAC | CGAGACACGATGGTGAAGGT |
| c73281 | GCGTACATAAATACTCGG | GGGCATTATCATTAGCTC |
| c18049 | GCTTTGAATCTTGAGACGGACA | GCCCAGAGCATCTACGAC |
| c54526 | GGCCAACCAATTAATCCAG | TTCATTATGTGGCAAACCAG |
| c21888 | TAGACTTCCGACTTTTACGC | TTGATGGAATCCAACGACC |
| c3910 | TTCGGATCAATTTCGGTG | CATTTGAGAAAACGCCTA |
| c21419 | TTGGATAATGCCATTGCCT | TCGCTAATGCCACAATATCCAG |
| c21529 | AGGTTGTAAAATGACCGAA | TGCACTGATTCAATATCGAAC |
| c4288 | TACTTATTCCAGCCATTTTCGTT | TTCTATCGCTTCATGTTAGGTCT |