Literature DB >> 28348253

Mechanocellular models of epithelial morphogenesis.

Alexander G Fletcher1,2, Fergus Cooper3, Ruth E Baker3.   

Abstract

Embryonic epithelia achieve complex morphogenetic movements, including in-plane reshaping, bending and folding, through the coordinated action and rearrangement of individual cells. Technical advances in molecular and live-imaging studies of epithelial dynamics provide a very real opportunity to understand how cell-level processes facilitate these large-scale tissue rearrangements. However, the large datasets that we are now able to generate require careful interpretation. In combination with experimental approaches, computational modelling allows us to challenge and refine our current understanding of epithelial morphogenesis and to explore experimentally intractable questions. To this end, a variety of cell-based modelling approaches have been developed to describe cell-cell mechanical interactions, ranging from vertex and 'finite-element' models that approximate each cell geometrically by a polygon representing the cell's membrane, to immersed boundary and subcellular element models that allow for more arbitrary cell shapes. Here, we review how these models have been used to provide insights into epithelial morphogenesis and describe how such models could help future efforts to decipher the forces and mechanical and biochemical feedbacks that guide cell and tissue-level behaviour. In addition, we discuss current challenges associated with using computational models of morphogenetic processes in a quantitative and predictive way.This article is part of the themed issue 'Systems morphodynamics: understanding the development of tissue hardware'.
© 2017 The Author(s).

Entities:  

Keywords:  computational modelling; epithelial morphogenesis; finite-element model; immersed boundary method; subcellular element model

Mesh:

Year:  2017        PMID: 28348253      PMCID: PMC5379025          DOI: 10.1098/rstb.2015.0519

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  73 in total

1.  Assessing the mechanical energy costs of various tissue reshaping mechanisms.

Authors:  G Wayne Brodland; Jim H Veldhuis
Journal:  Biomech Model Mechanobiol       Date:  2012-06-27

2.  A biomechanical model for cell polarization and intercalation during Drosophila germband extension.

Authors:  Haihan Lan; Qiming Wang; Rodrigo Fernandez-Gonzalez; James J Feng
Journal:  Phys Biol       Date:  2015-09-10       Impact factor: 2.583

3.  A 3-D computational model predicts that cell deformation affects selectin-mediated leukocyte rolling.

Authors:  Sameer Jadhav; Charles D Eggleton; Konstantinos Konstantopoulos
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

4.  The influence of cell mechanics, cell-cell interactions, and proliferation on epithelial packing.

Authors:  Reza Farhadifar; Jens-Christian Röper; Benoit Aigouy; Suzanne Eaton; Frank Jülicher
Journal:  Curr Biol       Date:  2007-12-18       Impact factor: 10.834

Review 5.  Mechanisms and mechanics of cell competition in epithelia.

Authors:  Jean-Paul Vincent; Alexander G Fletcher; L Alberto Baena-Lopez
Journal:  Nat Rev Mol Cell Biol       Date:  2013-08-14       Impact factor: 94.444

6.  Quantifying the mechanical micro-environment during three-dimensional cell expansion on microbeads by means of individual cell-based modelling.

Authors:  Bart Smeets; Tim Odenthal; Engelbert Tijskens; Herman Ramon; Hans Van Oosterwyck
Journal:  Comput Methods Biomech Biomed Engin       Date:  2013-10       Impact factor: 1.763

7.  Exploring the effects of mechanical feedback on epithelial topology.

Authors:  Tinri Aegerter-Wilmsen; Alister C Smith; Alix J Christen; Christof M Aegerter; Ernst Hafen; Konrad Basler
Journal:  Development       Date:  2010-02       Impact factor: 6.868

8.  Bubbly vertex dynamics: A dynamical and geometrical model for epithelial tissues with curved cell shapes.

Authors:  Yukitaka Ishimoto; Yoshihiro Morishita
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-11-13

Review 9.  Dynamics of actomyosin contractile activity during epithelial morphogenesis.

Authors:  Nicole Gorfinkiel; Guy B Blanchard
Journal:  Curr Opin Cell Biol       Date:  2011-07-20       Impact factor: 8.382

10.  An immersed boundary framework for modelling the growth of individual cells: an application to the early tumour development.

Authors:  Katarzyna A Rejniak
Journal:  J Theor Biol       Date:  2007-03-12       Impact factor: 2.691

View more
  27 in total

1.  Mechanical heterogeneity along single cell-cell junctions is driven by lateral clustering of cadherins during vertebrate axis elongation.

Authors:  Robert J Huebner; Abdul Naseer Malmi-Kakkada; Sena Sarıkaya; Shinuo Weng; D Thirumalai; John B Wallingford
Journal:  Elife       Date:  2021-05-25       Impact factor: 8.140

2.  Linear and nonlinear mechanical responses can be quite different in models for biological tissues.

Authors:  Preeti Sahu; Janice Kang; Gonca Erdemci-Tandogan; M Lisa Manning
Journal:  Soft Matter       Date:  2020-01-27       Impact factor: 3.679

3.  A one-dimensional individual-based mechanical model of cell movement in heterogeneous tissues and its coarse-grained approximation.

Authors:  R J Murphy; P R Buenzli; R E Baker; M J Simpson
Journal:  Proc Math Phys Eng Sci       Date:  2019-07-24       Impact factor: 2.704

Review 4.  Division orientation: disentangling shape and mechanical forces.

Authors:  Tara M Finegan; Dan T Bergstralh
Journal:  Cell Cycle       Date:  2019-05-21       Impact factor: 4.534

5.  A free boundary mechanobiological model of epithelial tissues.

Authors:  Tamara A Tambyah; Ryan J Murphy; Pascal R Buenzli; Matthew J Simpson
Journal:  Proc Math Phys Eng Sci       Date:  2020-11-18       Impact factor: 2.704

Review 6.  Taking the strain: quantifying the contributions of all cell behaviours to changes in epithelial shape.

Authors:  Guy B Blanchard
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-05-19       Impact factor: 6.237

Review 7.  How and why to build a mathematical model: A case study using prion aggregation.

Authors:  Mikahl Banwarth-Kuhn; Suzanne Sindi
Journal:  J Biol Chem       Date:  2020-01-31       Impact factor: 5.157

Review 8.  Programming Morphogenesis through Systems and Synthetic Biology.

Authors:  Jeremy J Velazquez; Emily Su; Patrick Cahan; Mo R Ebrahimkhani
Journal:  Trends Biotechnol       Date:  2017-12-08       Impact factor: 19.536

Review 9.  Viscoelastic voyages - Biophysical perspectives on cell intercalation during Drosophila gastrulation.

Authors:  Dinah Loerke; J Todd Blankenship
Journal:  Semin Cell Dev Biol       Date:  2019-11-26       Impact factor: 7.727

10.  Systems morphodynamics: understanding the development of tissue hardware.

Authors:  Yanlan Mao; Jeremy B A Green
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-05-19       Impact factor: 6.237

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.