Literature DB >> 28346401

Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion.

Zenpei Shimatani1, Sachiko Kashojiya2, Mariko Takayama2, Rie Terada3, Takayuki Arazoe1, Hisaki Ishii1, Hiroshi Teramura1, Tsuyoshi Yamamoto2, Hiroki Komatsu2, Kenji Miura2, Hiroshi Ezura2, Keiji Nishida1, Tohru Ariizumi2, Akihiko Kondo1,4.   

Abstract

We applied a fusion of CRISPR-Cas9 and activation-induced cytidine deaminase (Target-AID) for point mutagenesis at genomic regions specified by single guide RNAs (sgRNAs) in two crop plants. In rice, we induced multiple herbicide-resistance point mutations by multiplexed editing using herbicide selection, while in tomato we generated marker-free plants with homozygous heritable DNA substitutions, demonstrating the feasibility of base editing for crop improvement.

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Year:  2017        PMID： 28346401     DOI： 10.1038/nbt.3833

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


  16 in total

1.  Efficient gene targeting by homologous recombination in rice.

Authors:  Rie Terada; Hiroko Urawa; Yoshishige Inagaki; Kazuo Tsugane; Shigeru Iida
Journal:  Nat Biotechnol       Date:  2002-09-09       Impact factor: 54.908

2.  Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana.

Authors:  Friedrich Fauser; Simon Schiml; Holger Puchta
Journal:  Plant J       Date:  2014-06-17       Impact factor: 6.417

3.  Generation of Targeted Point Mutations in Rice by a Modified CRISPR/Cas9 System.

Authors:  Jingying Li; Yongwei Sun; Jinlu Du; Yunde Zhao; Lanqin Xia
Journal:  Mol Plant       Date:  2016-12-08       Impact factor: 13.164

Review 4.  Resistance to AHAS inhibitor herbicides: current understanding.

Authors:  Qin Yu; Stephen B Powles
Journal:  Pest Manag Sci       Date:  2014-01-20       Impact factor: 4.845

5.  Gene editing a constitutively active OsRac1 by homologous recombination-based gene targeting induces immune responses in rice.

Authors:  Thu Thi Dang; Zenpei Shimatani; Yoji Kawano; Rie Terada; Ko Shimamoto
Journal:  Plant Cell Physiol       Date:  2013-10-24       Impact factor: 4.927

6.  Negative reciprocal interactions between gibberellin and cytokinin in tomato.

Authors:  Shay Fleishon; Eilon Shani; Naomi Ori; David Weiss
Journal:  New Phytol       Date:  2011-01-18       Impact factor: 10.151

7.  Cleavage of foot-and-mouth disease virus polyprotein is mediated by residues located within a 19 amino acid sequence.

Authors:  M D Ryan; A M King; G P Thomas
Journal:  J Gen Virol       Date:  1991-11       Impact factor: 3.891

8.  CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool.

Authors:  Manuel Stemmer; Thomas Thumberger; Maria Del Sol Keyer; Joachim Wittbrodt; Juan L Mateo
Journal:  PLoS One       Date:  2015-04-24       Impact factor: 3.240

9.  Characterization of autonomous Dart1 transposons belonging to the hAT superfamily in rice.

Authors:  Zenpei Shimatani; Kyoko Takagi; Chang-Ho Eun; Masahiko Maekawa; Hiroyuki Takahara; Atsushi Hoshino; Qian Qian; Rie Terada; Yasuyo Johzuka-Hisatomi; Shigeru Iida; Kazuo Tsugane
Journal:  Mol Genet Genomics       Date:  2009-01-03       Impact factor: 3.291

10.  Genes that influence yield in tomato.

Authors:  Tohru Ariizumi; Yoshihito Shinozaki; Hiroshi Ezura
Journal:  Breed Sci       Date:  2013-03-01       Impact factor: 2.086
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  168 in total

Review 1.  Single-nucleotide editing: From principle, optimization to application.

Authors:  Jinling Tang; Trevor Lee; Tao Sun
Journal:  Hum Mutat       Date:  2019-09-15       Impact factor: 4.878

2.  Decreased Protein Abundance of Lycopene β-Cyclase Contributes to Red Flesh in Domesticated Watermelon.

Authors:  Jie Zhang; Honghe Sun; Shaogui Guo; Yi Ren; Maoying Li; Jinfang Wang; Haiying Zhang; Guoyi Gong; Yong Xu
Journal:  Plant Physiol       Date:  2020-04-22       Impact factor: 8.340

3.  Genome, Epigenome, and Transcriptome Editing via Chemical Modification of Nucleobases in Living Cells.

Authors:  Brodie L Ranzau; Alexis C Komor
Journal:  Biochemistry       Date:  2018-12-12       Impact factor: 3.162

4.  BEAT: A Python Program to Quantify Base Editing from Sanger Sequencing.

Authors:  Li Xu; Yakun Liu; Renzhi Han
Journal:  CRISPR J       Date:  2019-07-18

5.  An overview of designing and selection of sgRNAs for precise genome editing by the CRISPR-Cas9 system in plants.

Authors:  Ajay Prakash Uniyal; Komal Mansotra; Sudesh Kumar Yadav; Vinay Kumar
Journal:  3 Biotech       Date:  2019-05-21       Impact factor: 2.406

Review 6.  CRISPR/Cas systems: opportunities and challenges for crop breeding.

Authors:  Sukumar Biswas; Dabing Zhang; Jianxin Shi
Journal:  Plant Cell Rep       Date:  2021-05-11       Impact factor: 4.570

Review 7.  Approach for in vivo delivery of CRISPR/Cas system: a recent update and future prospect.

Authors:  Yu-Fan Chuang; Andrew J Phipps; Fan-Li Lin; Valerie Hecht; Alex W Hewitt; Peng-Yuan Wang; Guei-Sheung Liu
Journal:  Cell Mol Life Sci       Date:  2021-01-03       Impact factor: 9.261

Review 8.  Perspectives of CRISPR/Cas-mediated cis-engineering in horticulture: unlocking the neglected potential for crop improvement.

Authors:  Qiang Li; Manoj Sapkota; Esther van der Knaap
Journal:  Hortic Res       Date:  2020-03-15       Impact factor: 6.793

9.  Base editing on the rise.

Authors:  Andrew May
Journal:  Nat Biotechnol       Date:  2017-05-09       Impact factor: 54.908

10.  Characterization of CRISPR Mutants Targeting Genes Modulating Pectin Degradation in Ripening Tomato.

Authors:  Duoduo Wang; Nurul H Samsulrizal; Cheng Yan; Natalie S Allcock; Jim Craigon; Barbara Blanco-Ulate; Isabel Ortega-Salazar; Susan E Marcus; Hassan Moeiniyan Bagheri; Laura Perez Fons; Paul D Fraser; Timothy Foster; Rupert Fray; J Paul Knox; Graham B Seymour
Journal:  Plant Physiol       Date:  2018-11-20       Impact factor: 8.340
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