Literature DB >> 28345344

Unravelling and Quantifying the "NMR-Invisible" Metabolites Interacting with Human Serum Albumin by Binding Competition and T2 Relaxation-Based Decomposition Analysis.

Ruben Barrilero1,2,3, Noelia Ramírez1,2,3, Joan Carles Vallvé2,3,4, Delia Taverner2,4,5, Rocío Fuertes1,2,3,6, Núria Amigó1,2,3,6, Xavier Correig1,2,3.   

Abstract

Quantitative profiling of low-molecular-weight metabolites (LMWMs) by 1H NMR is routinely used in high-throughput serum metabolomics. First, the protein background is attenuated using a T2 filter; then, the LMWM signals are resolved by line-shape fitting. However, protein-binding modifies the motional properties of LMWM, and their signal partially attenuates with the T2 filter, along with the protein background. Consequently, the quantified LMWM signals do not reflect the total concentration in serum but the nonbinding part. Here we present a novel strategy based on binding competition to promote the release of the "NMR-invisible" metabolites from serum proteins and achieve quantifications closer to total concentrations. The study focuses on five clinically relevant amino acids with different binding properties (valine, isoleucine, leucine, tyrosine, and phenylalanine). We analyzed their binding affinity to human serum albumin (HSA) in serum mimic samples and promoted the release of their bound fraction by TSP titration. Furthermore, we used a novel combination of pseudo-2D CPMG and multivariate curve resolution analysis, allowing the separation of LMWM and protein signals and providing LMWM quantifications corrected for transverse relaxation effects. We found that TSP concentrations larger than 3 mM released most of the bound fraction and validated these findings in real serum/plasma samples.

Entities:  

Keywords:  TSP; amino acids; curve resolution; metabolomics; protein binding; quantitative NMR; transverse relaxation

Mesh:

Substances:

Year:  2017        PMID: 28345344     DOI: 10.1021/acs.jproteome.6b00814

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  4 in total

1.  Characterization of trotter horses urine metabolome by means of proton nuclear magnetic resonance spectroscopy.

Authors:  Chenglin Zhu; Vanessa Faillace; Fulvio Laus; Marilena Bazzano; Luca Laghi
Journal:  Metabolomics       Date:  2018-08-03       Impact factor: 4.290

2.  Citrate NMR peak irreproducibility in blood samples after reacquisition of spectra.

Authors:  Munsoor A Hanifa; Raluca G Maltesen; Bodil S Rasmussen; Katrine B Buggeskov; Hanne B Ravn; Martin Skott; Søren Nielsen; Jørgen Frøkiær; Troels Ring; Reinhard Wimmer
Journal:  Metabolomics       Date:  2019-12-19       Impact factor: 4.290

3.  NMR Spectroscopy-Based Metabolic Profiling of Biospecimens.

Authors:  Arjun Sengupta; Aalim M Weljie
Journal:  Curr Protoc Protein Sci       Date:  2019-12

4.  SMolESY: an efficient and quantitative alternative to on-instrument macromolecular 1H-NMR signal suppression.

Authors:  Panteleimon G Takis; Beatriz Jiménez; Caroline J Sands; Elena Chekmeneva; Matthew R Lewis
Journal:  Chem Sci       Date:  2020-05-27       Impact factor: 9.825

  4 in total

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