Literature DB >> 28343629

Biallelic Variants in OTUD6B Cause an Intellectual Disability Syndrome Associated with Seizures and Dysmorphic Features.

Teresa Santiago-Sim1, Lindsay C Burrage2, Frédéric Ebstein3, Mari J Tokita1, Marcus Miller1, Weimin Bi1, Alicia A Braxton1, Jill A Rosenfeld4, Maher Shahrour5, Andrea Lehmann3, Benjamin Cogné6, Sébastien Küry6, Thomas Besnard6, Bertrand Isidor7, Stéphane Bézieau6, Isabelle Hazart8, Honey Nagakura9, LaDonna L Immken9, Rebecca O Littlejohn10, Elizabeth Roeder11, Bulent Kara12, Katia Hardies13, Sarah Weckhuysen14, Patrick May15, Johannes R Lemke16, Orly Elpeleg17, Bassam Abu-Libdeh5, Kiely N James18, Jennifer L Silhavy18, Mahmoud Y Issa19, Maha S Zaki19, Joseph G Gleeson18, John R Seavitt4, Mary E Dickinson20, M Cecilia Ljungberg21, Sara Wells22, Sara J Johnson22, Lydia Teboul22, Christine M Eng1, Yaping Yang1, Peter-Michael Kloetzel23, Jason D Heaney24, Magdalena A Walkiewicz25.   

Abstract

Ubiquitination is a posttranslational modification that regulates many cellular processes including protein degradation, intracellular trafficking, cell signaling, and protein-protein interactions. Deubiquitinating enzymes (DUBs), which reverse the process of ubiquitination, are important regulators of the ubiquitin system. OTUD6B encodes a member of the ovarian tumor domain (OTU)-containing subfamily of deubiquitinating enzymes. Herein, we report biallelic pathogenic variants in OTUD6B in 12 individuals from 6 independent families with an intellectual disability syndrome associated with seizures and dysmorphic features. In subjects with predicted loss-of-function alleles, additional features include global developmental delay, microcephaly, absent speech, hypotonia, growth retardation with prenatal onset, feeding difficulties, structural brain abnormalities, congenital malformations including congenital heart disease, and musculoskeletal features. Homozygous Otud6b knockout mice were subviable, smaller in size, and had congenital heart defects, consistent with the severity of loss-of-function variants in humans. Analysis of peripheral blood mononuclear cells from an affected subject showed reduced incorporation of 19S subunits into 26S proteasomes, decreased chymotrypsin-like activity, and accumulation of ubiquitin-protein conjugates. Our findings suggest a role for OTUD6B in proteasome function, establish that defective OTUD6B function underlies a multisystemic human disorder, and provide additional evidence for the emerging relationship between the ubiquitin system and human disease.
Copyright © 2017 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

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Year:  2017        PMID: 28343629      PMCID: PMC5384096          DOI: 10.1016/j.ajhg.2017.03.001

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  38 in total

1.  Non-canonical inhibition of DNA damage-dependent ubiquitination by OTUB1.

Authors:  Shinichiro Nakada; Ikue Tai; Stephanie Panier; Abdallah Al-Hakim; Shun-Ichiro Iemura; Yu-Chi Juang; Lara O'Donnell; Ayako Kumakubo; Meagan Munro; Frank Sicheri; Anne-Claude Gingras; Tohru Natsume; Toshio Suda; Daniel Durocher
Journal:  Nature       Date:  2010-08-19       Impact factor: 49.962

2.  Targeted deep resequencing identifies MID2 mutation for X-linked intellectual disability with varied disease severity in a large kindred from India.

Authors:  Thenral S Geetha; Kulandaimanuvel Antony Michealraj; Madhulika Kabra; Gurjit Kaur; Ramesh C Juyal; B K Thelma
Journal:  Hum Mutat       Date:  2013-10-21       Impact factor: 4.878

Review 3.  A20: from ubiquitin editing to tumour suppression.

Authors:  Sarah G Hymowitz; Ingrid E Wertz
Journal:  Nat Rev Cancer       Date:  2010-04-12       Impact factor: 60.716

4.  Monoubiquitination of RPN10 regulates substrate recruitment to the proteasome.

Authors:  Marta Isasa; Elijah J Katz; Woong Kim; Verónica Yugo; Sheyla González; Donald S Kirkpatrick; Timothy M Thomson; Daniel Finley; Steven P Gygi; Bernat Crosas
Journal:  Mol Cell       Date:  2010-06-11       Impact factor: 17.970

5.  Deficiency of UBR1, a ubiquitin ligase of the N-end rule pathway, causes pancreatic dysfunction, malformations and mental retardation (Johanson-Blizzard syndrome).

Authors:  Martin Zenker; Julia Mayerle; Markus M Lerch; Andreas Tagariello; Klaus Zerres; Peter R Durie; Matthias Beier; Georg Hülskamp; Celina Guzman; Helga Rehder; Frits A Beemer; Ben Hamel; Philippe Vanlieferinghen; Ruth Gershoni-Baruch; Marta W Vieira; Miroslav Dumic; Ron Auslender; Vera L Gil-da-Silva-Lopes; Simone Steinlicht; Manfred Rauh; Stavit A Shalev; Christian Thiel; Arif B Ekici; Andreas Winterpacht; Yong Tae Kwon; Alexander Varshavsky; André Reis
Journal:  Nat Genet       Date:  2005-11-20       Impact factor: 38.330

6.  GeneMatcher: a matching tool for connecting investigators with an interest in the same gene.

Authors:  Nara Sobreira; François Schiettecatte; David Valle; Ada Hamosh
Journal:  Hum Mutat       Date:  2015-08-13       Impact factor: 4.878

7.  A new infant case of Nakajo-Nishimura syndrome with a genetic mutation in the immunoproteasome subunit: an overlapping entity with JMP and CANDLE syndrome related to PSMB8 mutations.

Authors:  Kayo Kunimoto; Ayako Kimura; Koji Uede; Masumi Okuda; Noriyuki Aoyagi; Fukumi Furukawa; Nobuo Kanazawa
Journal:  Dermatology       Date:  2013-08-08       Impact factor: 5.366

8.  OTUD7B controls non-canonical NF-κB activation through deubiquitination of TRAF3.

Authors:  Hongbo Hu; George C Brittain; Jae-Hoon Chang; Nahum Puebla-Osorio; Jin Jin; Anna Zal; Yichuan Xiao; Xuhong Cheng; Mikyoung Chang; Yang-Xin Fu; Tomasz Zal; Chengming Zhu; Shao-Cong Sun
Journal:  Nature       Date:  2013-01-20       Impact factor: 69.504

9.  Autoregulation of the 26S proteasome by in situ ubiquitination.

Authors:  Andrew D Jacobson; Andrea MacFadden; Zhiping Wu; Junmin Peng; Chang-Wei Liu
Journal:  Mol Biol Cell       Date:  2014-04-17       Impact factor: 4.138

10.  High-throughput discovery of novel developmental phenotypes.

Authors:  Mary E Dickinson; Ann M Flenniken; Xiao Ji; Lydia Teboul; Michael D Wong; Jacqueline K White; Terrence F Meehan; Wolfgang J Weninger; Henrik Westerberg; Hibret Adissu; Candice N Baker; Lynette Bower; James M Brown; L Brianna Caddle; Francesco Chiani; Dave Clary; James Cleak; Mark J Daly; James M Denegre; Brendan Doe; Mary E Dolan; Sarah M Edie; Helmut Fuchs; Valerie Gailus-Durner; Antonella Galli; Alessia Gambadoro; Juan Gallegos; Shiying Guo; Neil R Horner; Chih-Wei Hsu; Sara J Johnson; Sowmya Kalaga; Lance C Keith; Louise Lanoue; Thomas N Lawson; Monkol Lek; Manuel Mark; Susan Marschall; Jeremy Mason; Melissa L McElwee; Susan Newbigging; Lauryl M J Nutter; Kevin A Peterson; Ramiro Ramirez-Solis; Douglas J Rowland; Edward Ryder; Kaitlin E Samocha; John R Seavitt; Mohammed Selloum; Zsombor Szoke-Kovacs; Masaru Tamura; Amanda G Trainor; Ilinca Tudose; Shigeharu Wakana; Jonathan Warren; Olivia Wendling; David B West; Leeyean Wong; Atsushi Yoshiki; Daniel G MacArthur; Glauco P Tocchini-Valentini; Xiang Gao; Paul Flicek; Allan Bradley; William C Skarnes; Monica J Justice; Helen E Parkinson; Mark Moore; Sara Wells; Robert E Braun; Karen L Svenson; Martin Hrabe de Angelis; Yann Herault; Tim Mohun; Ann-Marie Mallon; R Mark Henkelman; Steve D M Brown; David J Adams; K C Kent Lloyd; Colin McKerlie; Arthur L Beaudet; Maja Bućan; Stephen A Murray
Journal:  Nature       Date:  2016-09-14       Impact factor: 49.962

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  26 in total

1.  A New Family with a Novel OTUD6B Mutation: Practicing Whole Exome Sequencing for Antenatal Diagnosis of Tetralogy of Fallot.

Authors:  Esra Börklü; Umut Altunoğlu; Serpil Eraslan; Hülya Kayserili
Journal:  Mol Syndromol       Date:  2022-01-26

2.  Activity-based probe profiling of RNF12 E3 ubiquitin ligase function in Tonne-Kalscheuer syndrome.

Authors:  Francisco Bustos; Sunil Mathur; Carmen Espejo-Serrano; Rachel Toth; C James Hastie; Satpal Virdee; Greg M Findlay
Journal:  Life Sci Alliance       Date:  2022-06-28

Review 3.  SAGA-Dependent Histone H2Bub1 Deubiquitination Is Essential for Cellular Ubiquitin Balance during Embryonic Development.

Authors:  Farrah El-Saafin; Didier Devys; Steven A Johnsen; Stéphane D Vincent; László Tora
Journal:  Int J Mol Sci       Date:  2022-07-05       Impact factor: 6.208

4.  Novel biallelic variants affecting the OTU domain of the gene OTUD6B associate with severe intellectual disability syndrome and molecular dynamics simulations.

Authors:  Sultan Cingöz; Didem Soydemir; Tülay Öncü Öner; Ezgi Karaca; Burcu Özden; Semra Hız Kurul; Erhan Bayram; Bradley P Coe; Deborah A Nickerson; Evan E Eichler
Journal:  Eur J Med Genet       Date:  2022-04-14       Impact factor: 2.465

5.  PSMD12 haploinsufficiency in a neurodevelopmental disorder with autistic features.

Authors:  Raida Khalil; Connor Kenny; R Sean Hill; Ganeshwaran H Mochida; Ramzi Nasir; Jennifer N Partlow; Brenda J Barry; Muna Al-Saffar; Chloe Egan; Christine R Stevens; Stacey B Gabriel; A James Barkovich; Jay W Ellison; Lihadh Al-Gazali; Christopher A Walsh; Maria H Chahrour
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2018-11-13       Impact factor: 3.568

6.  Deubiquitylase OTUD6B stabilizes the mutated pVHL and suppresses cell migration in clear cell renal cell carcinoma.

Authors:  Kai Guo; Yinghua Wei; Ze Wang; Xiaoli Zhang; Xin Zhang; Xinxin Liu; Wenyong Wu; Zhengsheng Wu; Lingqiang Zhang; Chun-Ping Cui
Journal:  Cell Death Dis       Date:  2022-02-02       Impact factor: 8.469

7.  Rare germline heterozygous missense variants in BRCA1-associated protein 1, BAP1, cause a syndromic neurodevelopmental disorder.

Authors:  Sébastien Küry; Frédéric Ebstein; Alice Mollé; Thomas Besnard; Ming-Kang Lee; Virginie Vignard; Tiphaine Hery; Mathilde Nizon; Grazia M S Mancini; Jacques C Giltay; Benjamin Cogné; Kirsty McWalter; Wallid Deb; Hagar Mor-Shaked; Hong Li; Rhonda E Schnur; Ingrid M Wentzensen; Anne-Sophie Denommé-Pichon; Cynthia Fourgeux; Frans W Verheijen; Eva Faurie; Rachel Schot; Cathy A Stevens; Daphne J Smits; Eileen Barr; Ruth Sheffer; Jonathan A Bernstein; Chandler L Stimach; Eliana Kovitch; Vandana Shashi; Kelly Schoch; Whitney Smith; Richard H van Jaarsveld; Anna C E Hurst; Kirstin Smith; Evan H Baugh; Suzanne G Bohm; Emílie Vyhnálková; Lukáš Ryba; Capucine Delnatte; Juanita Neira; Dominique Bonneau; Annick Toutain; Jill A Rosenfeld; Séverine Audebert-Bellanger; Brigitte Gilbert-Dussardier; Sylvie Odent; Frédéric Laumonnier; Seth I Berger; Ann C M Smith; Franck Bourdeaut; Marc-Henri Stern; Richard Redon; Elke Krüger; Raphaël Margueron; Stéphane Bézieau; Jeremie Poschmann; Bertrand Isidor
Journal:  Am J Hum Genet       Date:  2022-01-19       Impact factor: 11.043

Review 8.  Regulation of Cancer Metabolism by Deubiquitinating Enzymes: The Warburg Effect.

Authors:  So-Hee Kim; Kwang-Hyun Baek
Journal:  Int J Mol Sci       Date:  2021-06-08       Impact factor: 5.923

9.  OTUD7A Regulates Neurodevelopmental Phenotypes in the 15q13.3 Microdeletion Syndrome.

Authors:  Mohammed Uddin; Brianna K Unda; Vickie Kwan; Nicholas T Holzapfel; Sean H White; Leon Chalil; Marc Woodbury-Smith; Karen S Ho; Erin Harward; Nadeem Murtaza; Biren Dave; Giovanna Pellecchia; Lia D'Abate; Thomas Nalpathamkalam; Sylvia Lamoureux; John Wei; Marsha Speevak; James Stavropoulos; Kristin J Hope; Brad W Doble; Jacob Nielsen; E Robert Wassman; Stephen W Scherer; Karun K Singh
Journal:  Am J Hum Genet       Date:  2018-02-01       Impact factor: 11.025

10.  RNF12 X-Linked Intellectual Disability Mutations Disrupt E3 Ligase Activity and Neural Differentiation.

Authors:  Francisco Bustos; Anna Segarra-Fas; Viduth K Chaugule; Lennart Brandenburg; Emma Branigan; Rachel Toth; Thomas Macartney; Axel Knebel; Ronald T Hay; Helen Walden; Greg M Findlay
Journal:  Cell Rep       Date:  2018-05-08       Impact factor: 9.423

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