Literature DB >> 26220891

GeneMatcher: a matching tool for connecting investigators with an interest in the same gene.

Nara Sobreira1, François Schiettecatte2, David Valle1, Ada Hamosh1.   

Abstract

Here, we describe an overview and update on GeneMatcher (http://www.genematcher.org), a freely accessible Web-based tool developed as part of the Baylor-Hopkins Center for Mendelian Genomics. We created GeneMatcher with the goal of identifying additional individuals with rare phenotypes who had variants in the same candidate disease gene. We also wanted to facilitate connections to basic scientists working on orthologous genes in model systems with the goal of connecting their work to human Mendelian phenotypes. Meeting these goals will enhance the identification of novel Mendelian genes. Launched in September, 2013, GeneMatcher now has 2,178 candidate genes from 486 submitters spread across 38 countries entered in the database (June 1, 2015). GeneMatcher is also part of the Matchmaker Exchange (http://matchmakerexchange.org/) with an Application Programing Interface enabling submitters to query other databases of genetic variants and phenotypes without having to create accounts and data entries in multiple systems.
© 2015 WILEY PERIODICALS, INC.

Entities:  

Keywords:  Matchmaker Exchange; Mendelian disease; next-generation sequencing; variant analysis; whole exome sequencing; whole genome sequencing

Mesh:

Year:  2015        PMID: 26220891      PMCID: PMC4833888          DOI: 10.1002/humu.22844

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  5 in total

1.  New tools for Mendelian disease gene identification: PhenoDB variant analysis module; and GeneMatcher, a web-based tool for linking investigators with an interest in the same gene.

Authors:  Nara Sobreira; François Schiettecatte; Corinne Boehm; David Valle; Ada Hamosh
Journal:  Hum Mutat       Date:  2015-04       Impact factor: 4.878

2.  Molecular findings among patients referred for clinical whole-exome sequencing.

Authors:  Yaping Yang; Donna M Muzny; Fan Xia; Zhiyv Niu; Richard Person; Yan Ding; Patricia Ward; Alicia Braxton; Min Wang; Christian Buhay; Narayanan Veeraraghavan; Alicia Hawes; Theodore Chiang; Magalie Leduc; Joke Beuten; Jing Zhang; Weimin He; Jennifer Scull; Alecia Willis; Megan Landsverk; William J Craigen; Mir Reza Bekheirnia; Asbjorg Stray-Pedersen; Pengfei Liu; Shu Wen; Wendy Alcaraz; Hong Cui; Magdalena Walkiewicz; Jeffrey Reid; Matthew Bainbridge; Ankita Patel; Eric Boerwinkle; Arthur L Beaudet; James R Lupski; Sharon E Plon; Richard A Gibbs; Christine M Eng
Journal:  JAMA       Date:  2014-11-12       Impact factor: 56.272

3.  PhenoDB: a new web-based tool for the collection, storage, and analysis of phenotypic features.

Authors:  Ada Hamosh; Nara Sobreira; Julie Hoover-Fong; V Reid Sutton; Corinne Boehm; François Schiettecatte; David Valle
Journal:  Hum Mutat       Date:  2013-03-04       Impact factor: 4.878

4.  Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders.

Authors:  Heather Fairfield; Anuj Srivastava; Guruprasad Ananda; Rangjiao Liu; Martin Kircher; Anuradha Lakshminarayana; Belinda S Harris; Son Yong Karst; Louise A Dionne; Coleen C Kane; Michelle Curtain; Melissa L Berry; Patricia F Ward-Bailey; Ian Greenstein; Candice Byers; Anne Czechanski; Jocelyn Sharp; Kristina Palmer; Polyxeni Gudis; Whitney Martin; Abby Tadenev; Laurent Bogdanik; C Herbert Pratt; Bo Chang; David G Schroeder; Gregory A Cox; Paul Cliften; Jeffrey Milbrandt; Stephen Murray; Robert Burgess; David E Bergstrom; Leah Rae Donahue; Hanan Hamamy; Amira Masri; Federico A Santoni; Periklis Makrythanasis; Stylianos E Antonarakis; Jay Shendure; Laura G Reinholdt
Journal:  Genome Res       Date:  2015-04-27       Impact factor: 9.043

5.  The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.

Authors:  Sebastian Köhler; Sandra C Doelken; Christopher J Mungall; Sebastian Bauer; Helen V Firth; Isabelle Bailleul-Forestier; Graeme C M Black; Danielle L Brown; Michael Brudno; Jennifer Campbell; David R FitzPatrick; Janan T Eppig; Andrew P Jackson; Kathleen Freson; Marta Girdea; Ingo Helbig; Jane A Hurst; Johanna Jähn; Laird G Jackson; Anne M Kelly; David H Ledbetter; Sahar Mansour; Christa L Martin; Celia Moss; Andrew Mumford; Willem H Ouwehand; Soo-Mi Park; Erin Rooney Riggs; Richard H Scott; Sanjay Sisodiya; Steven Van Vooren; Ronald J Wapner; Andrew O M Wilkie; Caroline F Wright; Anneke T Vulto-van Silfhout; Nicole de Leeuw; Bert B A de Vries; Nicole L Washingthon; Cynthia L Smith; Monte Westerfield; Paul Schofield; Barbara J Ruef; Georgios V Gkoutos; Melissa Haendel; Damian Smedley; Suzanna E Lewis; Peter N Robinson
Journal:  Nucleic Acids Res       Date:  2013-11-11       Impact factor: 16.971

  5 in total
  513 in total

1.  Biallelic Mutations in MRPS34 Lead to Instability of the Small Mitoribosomal Subunit and Leigh Syndrome.

Authors:  Nicole J Lake; Bryn D Webb; David A Stroud; Tara R Richman; Benedetta Ruzzenente; Alison G Compton; Hayley S Mountford; Juliette Pulman; Coralie Zangarelli; Marlene Rio; Nathalie Boddaert; Zahra Assouline; Mingma D Sherpa; Eric E Schadt; Sander M Houten; James Byrnes; Elizabeth M McCormick; Zarazuela Zolkipli-Cunningham; Katrina Haude; Zhancheng Zhang; Kyle Retterer; Renkui Bai; Sarah E Calvo; Vamsi K Mootha; John Christodoulou; Agnes Rötig; Aleksandra Filipovska; Ingrid Cristian; Marni J Falk; Metodi D Metodiev; David R Thorburn
Journal:  Am J Hum Genet       Date:  2017-08-03       Impact factor: 11.025

2.  Heterozygous De Novo UBTF Gain-of-Function Variant Is Associated with Neurodegeneration in Childhood.

Authors:  Simon Edvardson; Claudia M Nicolae; Pankaj B Agrawal; Cyril Mignot; Katelyn Payne; Asuri Narayan Prasad; Chitra Prasad; Laurie Sadler; Caroline Nava; Thomas E Mullen; Amber Begtrup; Berivan Baskin; Zöe Powis; Avraham Shaag; Boris Keren; George-Lucian Moldovan; Orly Elpeleg
Journal:  Am J Hum Genet       Date:  2017-08-03       Impact factor: 11.025

3.  De Novo Mutations in YWHAG Cause Early-Onset Epilepsy.

Authors:  Ilaria Guella; Marna B McKenzie; Daniel M Evans; Sarah E Buerki; Eric B Toyota; Margot I Van Allen; Mohnish Suri; Frances Elmslie; Marleen E H Simon; Koen L I van Gassen; Delphine Héron; Boris Keren; Caroline Nava; Mary B Connolly; Michelle Demos; Matthew J Farrer
Journal:  Am J Hum Genet       Date:  2017-08-03       Impact factor: 11.025

Review 4.  The frontiers of sequencing in undiagnosed neurodevelopmental diseases.

Authors:  Hane Lee; Stanley F Nelson
Journal:  Curr Opin Genet Dev       Date:  2020-06-27       Impact factor: 5.578

5.  Homozygosity for a nonsense variant in AIMP2 is associated with a progressive neurodevelopmental disorder with microcephaly, seizures, and spastic quadriparesis.

Authors:  Anju Shukla; Aneek Das Bhowmik; Malavika Hebbar; Kadavigere V Rajagopal; Katta M Girisha; Neerja Gupta; Ashwin Dalal
Journal:  J Hum Genet       Date:  2017-11-16       Impact factor: 3.172

6.  Variants in SCAF4 Cause a Neurodevelopmental Disorder and Are Associated with Impaired mRNA Processing.

Authors:  Anna Fliedner; Philipp Kirchner; Antje Wiesener; Irma van de Beek; Quinten Waisfisz; Mieke van Haelst; Daryl A Scott; Seema R Lalani; Jill A Rosenfeld; Mahshid S Azamian; Fan Xia; Marina Dutra-Clarke; Julian A Martinez-Agosto; Hane Lee; Grace J Noh; Natalie Lippa; Anna Alkelai; Vimla Aggarwal; Katherine E Agre; Ralitza Gavrilova; Ghayda M Mirzaa; Rachel Straussberg; Rony Cohen; Brooke Horist; Vidya Krishnamurthy; Kirsty McWalter; Jane Juusola; Laura Davis-Keppen; Lisa Ohden; Marjon van Slegtenhorst; Stella A de Man; Arif B Ekici; Anne Gregor; Ingrid van de Laar; Christiane Zweier
Journal:  Am J Hum Genet       Date:  2020-07-29       Impact factor: 11.025

7.  Haploinsufficiency of ZNF462 is associated with craniofacial anomalies, corpus callosum dysgenesis, ptosis, and developmental delay.

Authors:  Karin Weiss; Kristen Wigby; Madeleine Fannemel; Lindsay B Henderson; Natalie Beck; Neeti Ghali; D D D Study; Britt-Marie Anderlid; Johanna Lundin; Ada Hamosh; Marilyn C Jones; Sondhya Ghedia; Maximilian Muenke; Paul Kruszka
Journal:  Eur J Hum Genet       Date:  2017-05-17       Impact factor: 4.246

8.  Survival among children with "Lethal" congenital contracture syndrome 11 caused by novel mutations in the gliomedin gene (GLDN).

Authors:  Jennifer A Wambach; Georg M Stettner; Tobias B Haack; Karin Writzl; Andreja Škofljanec; Aleš Maver; Francina Munell; Stephan Ossowski; Mattia Bosio; Daniel J Wegner; Marwan Shinawi; Dustin Baldridge; Bader Alhaddad; Tim M Strom; Dorothy K Grange; Ekkehard Wilichowski; Robin Troxell; James Collins; Barbara B Warner; Robert E Schmidt; Alan Pestronk; F Sessions Cole; Robert Steinfeld
Journal:  Hum Mutat       Date:  2017-08-17       Impact factor: 4.878

9.  Missense variants in the chromatin remodeler CHD1 are associated with neurodevelopmental disability.

Authors:  Genay O Pilarowski; Hilary J Vernon; Carolyn D Applegate; Leandros Boukas; Megan T Cho; Christina A Gurnett; Paul J Benke; Erin Beaver; Jennifer M Heeley; Livija Medne; Ian D Krantz; Meron Azage; Dmitriy Niyazov; Lindsay B Henderson; Ingrid M Wentzensen; Berivan Baskin; Maria J Guillen Sacoto; Gregory D Bowman; Hans T Bjornsson
Journal:  J Med Genet       Date:  2017-09-02       Impact factor: 6.318

10.  Novel congenital disorder of O-linked glycosylation caused by GALNT2 loss of function.

Authors:  Monica Zilmer; Andrew C Edmondson; Sumeet A Khetarpal; Viola Alesi; Maha S Zaki; Kevin Rostasy; Camilla G Madsen; Francesca R Lepri; Lorenzo Sinibaldi; Raffaella Cusmai; Antonio Novelli; Mahmoud Y Issa; Christina D Fenger; Rami Abou Jamra; Heiko Reutter; Silvana Briuglia; Emanuele Agolini; Lars Hansen; Ulla E Petäjä-Repo; John Hintze; Kimiyo M Raymond; Kristen Liedtke; Valentina Stanley; Damir Musaev; Joseph G Gleeson; Cecilia Vitali; W Timothy O'Brien; Elena Gardella; Guido Rubboli; Daniel J Rader; Katrine T Schjoldager; Rikke S Møller
Journal:  Brain       Date:  2020-04-01       Impact factor: 13.501

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