Literature DB >> 28341629

Persistent homology and the branching topologies of plants.

Mao Li1, Keith Duncan1, Christopher N Topp2, Daniel H Chitwood2.   

Abstract

Mesh：

Year:  2017        PMID： 28341629     DOI： 10.3732/ajb.1700046

Source DB:  PubMed          Journal:  Am J Bot        ISSN： 0002-9122            Impact factor:   3.844


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  16 in total

1.  The Persistent Homology Mathematical Framework Provides Enhanced Genotype-to-Phenotype Associations for Plant Morphology.

Authors:  Mao Li; Margaret H Frank; Viktoriya Coneva; Washington Mio; Daniel H Chitwood; Christopher N Topp
Journal:  Plant Physiol       Date:  2018-06-05       Impact factor: 8.340

2.  Phenotyping Complex Plant Structures with a Large Format Industrial Scale High-Resolution X-Ray Tomography Instrument.

Authors:  Keith E Duncan; Christopher N Topp
Journal:  Methods Mol Biol       Date:  2022

3.  Call for Participation: Collaborative Benchmarking of Functional-Structural Root Architecture Models. The Case of Root Water Uptake.

Authors:  Andrea Schnepf; Christopher K Black; Valentin Couvreur; Benjamin M Delory; Claude Doussan; Axelle Koch; Timo Koch; Mathieu Javaux; Magdalena Landl; Daniel Leitner; Guillaume Lobet; Trung Hieu Mai; Félicien Meunier; Lukas Petrich; Johannes A Postma; Eckart Priesack; Volker Schmidt; Jan Vanderborght; Harry Vereecken; Matthias Weber
Journal:  Front Plant Sci       Date:  2020-03-31       Impact factor: 5.753

4.  Morphometrics Reveals Complex and Heritable Apple Leaf Shapes.

Authors:  Zoë Migicovsky; Mao Li; Daniel H Chitwood; Sean Myles
Journal:  Front Plant Sci       Date:  2018-01-04       Impact factor: 5.753

Review 5.  Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences.

Authors:  Alexander Bucksch; Acheampong Atta-Boateng; Akomian F Azihou; Dorjsuren Battogtokh; Aly Baumgartner; Brad M Binder; Siobhan A Braybrook; Cynthia Chang; Viktoirya Coneva; Thomas J DeWitt; Alexander G Fletcher; Malia A Gehan; Diego Hernan Diaz-Martinez; Lilan Hong; Anjali S Iyer-Pascuzzi; Laura L Klein; Samuel Leiboff; Mao Li; Jonathan P Lynch; Alexis Maizel; Julin N Maloof; R J Cody Markelz; Ciera C Martinez; Laura A Miller; Washington Mio; Wojtek Palubicki; Hendrik Poorter; Christophe Pradal; Charles A Price; Eetu Puttonen; John B Reese; Rubén Rellán-Álvarez; Edgar P Spalding; Erin E Sparks; Christopher N Topp; Joseph H Williams; Daniel H Chitwood
Journal:  Front Plant Sci       Date:  2017-06-09       Impact factor: 5.753

6.  Topological Data Analysis as a Morphometric Method: Using Persistent Homology to Demarcate a Leaf Morphospace.

Authors:  Mao Li; Hong An; Ruthie Angelovici; Clement Bagaza; Albert Batushansky; Lynn Clark; Viktoriya Coneva; Michael J Donoghue; Erika Edwards; Diego Fajardo; Hui Fang; Margaret H Frank; Timothy Gallaher; Sarah Gebken; Theresa Hill; Shelley Jansky; Baljinder Kaur; Phillip C Klahs; Laura L Klein; Vasu Kuraparthy; Jason Londo; Zoë Migicovsky; Allison Miller; Rebekah Mohn; Sean Myles; Wagner C Otoni; J C Pires; Edmond Rieffer; Sam Schmerler; Elizabeth Spriggs; Christopher N Topp; Allen Van Deynze; Kuang Zhang; Linglong Zhu; Braden M Zink; Daniel H Chitwood
Journal:  Front Plant Sci       Date:  2018-04-25       Impact factor: 5.753

7.  Image-based phenotyping for identification of QTL determining fruit shape and size in American cranberry (Vaccinium macrocarpon L.).

Authors:  Luis Diaz-Garcia; Giovanny Covarrubias-Pazaran; Brandon Schlautman; Edward Grygleski; Juan Zalapa
Journal:  PeerJ       Date:  2018-08-15       Impact factor: 2.984

8.  Comprehensive 3D phenotyping reveals continuous morphological variation across genetically diverse sorghum inflorescences.

Authors:  Mao Li; Mon-Ray Shao; Dan Zeng; Tao Ju; Elizabeth A Kellogg; Christopher N Topp
Journal:  New Phytol       Date:  2020-04-16       Impact factor: 10.151

9.  The Quantitative Genetic Control of Root Architecture in Maize.

Authors:  Adam L Bray; Christopher N Topp
Journal:  Plant Cell Physiol       Date:  2018-10-01       Impact factor: 4.927

10.  archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems.

Authors:  Benjamin M Delory; Mao Li; Christopher N Topp; Guillaume Lobet
Journal:  F1000Res       Date:  2018-01-08
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