Literature DB >> 28337862

Bayesian sensitivity analysis of a 1D vascular model with Gaussian process emulators.

Alessandro Melis1,2, Richard H Clayton1,3, Alberto Marzo1,2.   

Abstract

One-dimensional models of the cardiovascular system can capture the physics of pulse waves but involve many parameters. Since these may vary among individuals, patient-specific models are difficult to construct. Sensitivity analysis can be used to rank model parameters by their effect on outputs and to quantify how uncertainty in parameters influences output uncertainty. This type of analysis is often conducted with a Monte Carlo method, where large numbers of model runs are used to assess input-output relations. The aim of this study was to demonstrate the computational efficiency of variance-based sensitivity analysis of 1D vascular models using Gaussian process emulators, compared to a standard Monte Carlo approach. The methodology was tested on four vascular networks of increasing complexity to analyse its scalability. The computational time needed to perform the sensitivity analysis with an emulator was reduced by the 99.96% compared to a Monte Carlo approach. Despite the reduced computational time, sensitivity indices obtained using the two approaches were comparable. The scalability study showed that the number of mechanistic simulations needed to train a Gaussian process for sensitivity analysis was of the order O(d), rather than O(d×103) needed for Monte Carlo analysis (where d is the number of parameters in the model). The efficiency of this approach, combined with capacity to estimate the impact of uncertain parameters on model outputs, will enable development of patient-specific models of the vascular system, and has the potential to produce results with clinical relevance.
© 2017 The Authors International Journal for Numerical Methods in Biomedical Engineering Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  1D vascular model; Gaussian process; Sobol; emulator; sensitivity analysis

Mesh:

Year:  2017        PMID: 28337862     DOI: 10.1002/cnm.2882

Source DB:  PubMed          Journal:  Int J Numer Method Biomed Eng        ISSN: 2040-7939            Impact factor:   2.747


  4 in total

1.  Gaussian process emulation to accelerate parameter estimation in a mechanical model of the left ventricle: a critical step towards clinical end-user relevance.

Authors:  Umberto Noè; Alan Lazarus; Hao Gao; Vinny Davies; Benn Macdonald; Kenneth Mangion; Colin Berry; Xiaoyu Luo; Dirk Husmeier
Journal:  J R Soc Interface       Date:  2019-07-03       Impact factor: 4.118

2.  Influence of image segmentation on one-dimensional fluid dynamics predictions in the mouse pulmonary arteries.

Authors:  Mitchel J Colebank; L Mihaela Paun; M Umar Qureshi; Naomi Chesler; Dirk Husmeier; Mette S Olufsen; Laura Ellwein Fix
Journal:  J R Soc Interface       Date:  2019-10-02       Impact factor: 4.118

3.  Fast parameter inference in a biomechanical model of the left ventricle by using statistical emulation.

Authors:  Vinny Davies; Umberto Noè; Alan Lazarus; Hao Gao; Benn Macdonald; Colin Berry; Xiaoyu Luo; Dirk Husmeier
Journal:  J R Stat Soc Ser C Appl Stat       Date:  2019-09-20       Impact factor: 1.864

4.  Assessing model mismatch and model selection in a Bayesian uncertainty quantification analysis of a fluid-dynamics model of pulmonary blood circulation.

Authors:  L Mihaela Paun; Mitchel J Colebank; Mette S Olufsen; Nicholas A Hill; Dirk Husmeier
Journal:  J R Soc Interface       Date:  2020-12-23       Impact factor: 4.118

  4 in total

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