Literature DB >> 28334935

Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?

Laura M Raffield1, Tin Louie2, Tamar Sofer2, Deepti Jain2, Eli Ipp3, Kent D Taylor4, George J Papanicolaou5, Larissa Avilés-Santa5, Leslie A Lange1, Cathy C Laurie2, Matthew P Conomos2, Timothy A Thornton2, Yii-Der Ida Chen4,6, Qibin Qi7, Scott Cotler8, Bharat Thyagarajan9, Neil Schneiderman10, Jerome I Rotter4,6, Alex P Reiner11, Henry J Lin4.   

Abstract

Genetic variants contribute to normal variation of iron-related traits and may also cause clinical syndromes of iron deficiency or excess. Iron overload and deficiency can adversely affect human health. For example, elevated iron storage is associated with increased diabetes risk, although mechanisms are still being investigated. We conducted the first genome-wide association study of serum iron, total iron binding capacity (TIBC), transferrin saturation, and ferritin in a Hispanic/Latino cohort, the Hispanic Community Health Study/Study of Latinos (>12 000 participants) and also assessed the generalization of previously known loci to this population. We then evaluated whether iron-associated variants were associated with diabetes and glycemic traits. We found evidence for a novel association between TIBC and a variant near the gene for protein phosphatase 1, regulatory subunit 3B (PPP1R3B; rs4841132, β = -0.116, P = 7.44 × 10-8). The effect strengthened when iron deficient individuals were excluded (β = -0.121, P = 4.78 × 10-9). Ten of sixteen variants previously associated with iron traits generalized to HCHS/SOL, including variants at the transferrin (TF), hemochromatosis (HFE), fatty acid desaturase 2 (FADS2)/myelin regulatory factor (MYRF), transmembrane protease, serine 6 (TMPRSS6), transferrin receptor (TFR2), N-acetyltransferase 2 (arylamine N-acetyltransferase) (NAT2), ABO blood group (ABO), and GRB2 associated binding protein 3 (GAB3) loci. In examining iron variant associations with glucose homeostasis, an iron-raising variant of TMPRSS6 was associated with lower HbA1c levels (P = 8.66 × 10-10). This association was attenuated upon adjustment for iron measures. In contrast, the iron-raising allele of PPP1R3B was associated with higher levels of fasting glucose (P = 7.70 × 10-7) and fasting insulin (P = 4.79 × 10-6), but these associations were not attenuated upon adjustment for TIBC-so iron is not likely a mediator. These results provide new genetic information on iron traits and their connection with glucose homeostasis.
© The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

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Year:  2017        PMID: 28334935      PMCID: PMC6075359          DOI: 10.1093/hmg/ddx082

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  53 in total

1.  Genomic variant annotation and prioritization with ANNOVAR and wANNOVAR.

Authors:  Hui Yang; Kai Wang
Journal:  Nat Protoc       Date:  2015-09-17       Impact factor: 13.491

2.  Effects of iron deficiency anemia on hemoglobin A1c in type 1 diabetes mellitus.

Authors:  O Tarim; A Küçükerdoğan; U Günay; O Eralp; I Ercan
Journal:  Pediatr Int       Date:  1999-08       Impact factor: 1.524

Review 3.  An overview of molecular basis of iron metabolism regulation and the associated pathologies.

Authors:  Bruno Silva; Paula Faustino
Journal:  Biochim Biophys Acta       Date:  2015-04-02

4.  Effects of HFE C282Y and H63D polymorphisms and polygenic background on iron stores in a large community sample of twins.

Authors:  J B Whitfield; L M Cullen; E C Jazwinska; L W Powell; A C Heath; G Zhu; D L Duffy; N G Martin
Journal:  Am J Hum Genet       Date:  2000-03-15       Impact factor: 11.025

5.  Design and implementation of the Hispanic Community Health Study/Study of Latinos.

Authors:  Paul D Sorlie; Larissa M Avilés-Santa; Sylvia Wassertheil-Smoller; Robert C Kaplan; Martha L Daviglus; Aida L Giachello; Neil Schneiderman; Leopoldo Raij; Gregory Talavera; Matthew Allison; Lisa Lavange; Lloyd E Chambless; Gerardo Heiss
Journal:  Ann Epidemiol       Date:  2010-08       Impact factor: 3.797

6.  Prevalence of major cardiovascular risk factors and cardiovascular diseases among Hispanic/Latino individuals of diverse backgrounds in the United States.

Authors:  Martha L Daviglus; Gregory A Talavera; M Larissa Avilés-Santa; Matthew Allison; Jianwen Cai; Michael H Criqui; Marc Gellman; Aida L Giachello; Natalia Gouskova; Robert C Kaplan; Lisa LaVange; Frank Penedo; Krista Perreira; Amber Pirzada; Neil Schneiderman; Sylvia Wassertheil-Smoller; Paul D Sorlie; Jeremiah Stamler
Journal:  JAMA       Date:  2012-11-07       Impact factor: 56.272

7.  Genome-wide admixture and association study of serum iron, ferritin, transferrin saturation and total iron binding capacity in African Americans.

Authors:  Jin Li; Leslie A Lange; Qing Duan; Yurong Lu; Andrew B Singleton; Alan B Zonderman; Michele K Evans; Yun Li; Herman A Taylor; Monte S Willis; Mike Nalls; James G Wilson; Ethan M Lange
Journal:  Hum Mol Genet       Date:  2014-09-15       Impact factor: 6.150

8.  Common variants at 10 genomic loci influence hemoglobin A₁(C) levels via glycemic and nonglycemic pathways.

Authors:  Nicole Soranzo; Serena Sanna; Eleanor Wheeler; Christian Gieger; Dörte Radke; Josée Dupuis; Nabila Bouatia-Naji; Claudia Langenberg; Inga Prokopenko; Elliot Stolerman; Manjinder S Sandhu; Matthew M Heeney; Joseph M Devaney; Muredach P Reilly; Sally L Ricketts; Alexandre F R Stewart; Benjamin F Voight; Christina Willenborg; Benjamin Wright; David Altshuler; Dan Arking; Beverley Balkau; Daniel Barnes; Eric Boerwinkle; Bernhard Böhm; Amélie Bonnefond; Lori L Bonnycastle; Dorret I Boomsma; Stefan R Bornstein; Yvonne Böttcher; Suzannah Bumpstead; Mary Susan Burnett-Miller; Harry Campbell; Antonio Cao; John Chambers; Robert Clark; Francis S Collins; Josef Coresh; Eco J C de Geus; Mariano Dei; Panos Deloukas; Angela Döring; Josephine M Egan; Roberto Elosua; Luigi Ferrucci; Nita Forouhi; Caroline S Fox; Christopher Franklin; Maria Grazia Franzosi; Sophie Gallina; Anuj Goel; Jürgen Graessler; Harald Grallert; Andreas Greinacher; David Hadley; Alistair Hall; Anders Hamsten; Caroline Hayward; Simon Heath; Christian Herder; Georg Homuth; Jouke-Jan Hottenga; Rachel Hunter-Merrill; Thomas Illig; Anne U Jackson; Antti Jula; Marcus Kleber; Christopher W Knouff; Augustine Kong; Jaspal Kooner; Anna Köttgen; Peter Kovacs; Knut Krohn; Brigitte Kühnel; Johanna Kuusisto; Markku Laakso; Mark Lathrop; Cécile Lecoeur; Man Li; Mingyao Li; Ruth J F Loos; Jian'an Luan; Valeriya Lyssenko; Reedik Mägi; Patrik K E Magnusson; Anders Mälarstig; Massimo Mangino; María Teresa Martínez-Larrad; Winfried März; Wendy L McArdle; Ruth McPherson; Christa Meisinger; Thomas Meitinger; Olle Melander; Karen L Mohlke; Vincent E Mooser; Mario A Morken; Narisu Narisu; David M Nathan; Matthias Nauck; Chris O'Donnell; Konrad Oexle; Nazario Olla; James S Pankow; Felicity Payne; John F Peden; Nancy L Pedersen; Leena Peltonen; Markus Perola; Ozren Polasek; Eleonora Porcu; Daniel J Rader; Wolfgang Rathmann; Samuli Ripatti; Ghislain Rocheleau; Michael Roden; Igor Rudan; Veikko Salomaa; Richa Saxena; David Schlessinger; Heribert Schunkert; Peter Schwarz; Udo Seedorf; Elizabeth Selvin; Manuel Serrano-Ríos; Peter Shrader; Angela Silveira; David Siscovick; Kjioung Song; Timothy D Spector; Kari Stefansson; Valgerdur Steinthorsdottir; David P Strachan; Rona Strawbridge; Michael Stumvoll; Ida Surakka; Amy J Swift; Toshiko Tanaka; Alexander Teumer; Gudmar Thorleifsson; Unnur Thorsteinsdottir; Anke Tönjes; Gianluca Usala; Veronique Vitart; Henry Völzke; Henri Wallaschofski; Dawn M Waterworth; Hugh Watkins; H-Erich Wichmann; Sarah H Wild; Gonneke Willemsen; Gordon H Williams; James F Wilson; Juliane Winkelmann; Alan F Wright; Carina Zabena; Jing Hua Zhao; Stephen E Epstein; Jeanette Erdmann; Hakon H Hakonarson; Sekar Kathiresan; Kay-Tee Khaw; Robert Roberts; Nilesh J Samani; Mark D Fleming; Robert Sladek; Gonçalo Abecasis; Michael Boehnke; Philippe Froguel; Leif Groop; Mark I McCarthy; W H Linda Kao; Jose C Florez; Manuela Uda; Nicholas J Wareham; Inês Barroso; James B Meigs
Journal:  Diabetes       Date:  2010-09-21       Impact factor: 9.461

9.  HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants.

Authors:  Lucas D Ward; Manolis Kellis
Journal:  Nucleic Acids Res       Date:  2011-11-07       Impact factor: 16.971

10.  Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.

Authors:  Beben Benyamin; Tonu Esko; Janina S Ried; Aparna Radhakrishnan; Sita H Vermeulen; Michela Traglia; Martin Gögele; Denise Anderson; Linda Broer; Clara Podmore; Jian'an Luan; Zoltan Kutalik; Serena Sanna; Peter van der Meer; Toshiko Tanaka; Fudi Wang; Harm-Jan Westra; Lude Franke; Evelin Mihailov; Lili Milani; Jonas Hälldin; Jonas Häldin; Juliane Winkelmann; Thomas Meitinger; Joachim Thiery; Annette Peters; Melanie Waldenberger; Augusto Rendon; Jennifer Jolley; Jennifer Sambrook; Lambertus A Kiemeney; Fred C Sweep; Cinzia F Sala; Christine Schwienbacher; Irene Pichler; Jennie Hui; Ayse Demirkan; Aaron Isaacs; Najaf Amin; Maristella Steri; Gérard Waeber; Niek Verweij; Joseph E Powell; Dale R Nyholt; Andrew C Heath; Pamela A F Madden; Peter M Visscher; Margaret J Wright; Grant W Montgomery; Nicholas G Martin; Dena Hernandez; Stefania Bandinelli; Pim van der Harst; Manuela Uda; Peter Vollenweider; Robert A Scott; Claudia Langenberg; Nicholas J Wareham; Cornelia van Duijn; John Beilby; Peter P Pramstaller; Andrew A Hicks; Willem H Ouwehand; Konrad Oexle; Christian Gieger; Andres Metspalu; Clara Camaschella; Daniela Toniolo; Dorine W Swinkels; John B Whitfield
Journal:  Nat Commun       Date:  2014-10-29       Impact factor: 14.919

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  14 in total

1.  A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.

Authors:  Jee-Young Moon; Tin L Louie; Deepti Jain; Tamar Sofer; Claudia Schurmann; Jennifer E Below; Chao-Qiang Lai; M Larissa Aviles-Santa; Gregory A Talavera; Caren E Smith; Lauren E Petty; Erwin P Bottinger; Yii-Der Ida Chen; Kent D Taylor; Martha L Daviglus; Jianwen Cai; Tao Wang; Katherine L Tucker; José M Ordovás; Craig L Hanis; Ruth J F Loos; Neil Schneiderman; Jerome I Rotter; Robert C Kaplan; Qibin Qi
Journal:  Diabetes Care       Date:  2019-06-18       Impact factor: 19.112

Review 2.  Genetics-driven discovery of novel regulators of lipid metabolism.

Authors:  Elizabeth E Ha; Andrew G Van Camp; Robert C Bauer
Journal:  Curr Opin Lipidol       Date:  2019-06       Impact factor: 4.776

3.  Generalizing polygenic risk scores from Europeans to Hispanics/Latinos.

Authors:  Kelsey E Grinde; Qibin Qi; Timothy A Thornton; Simin Liu; Aladdin H Shadyab; Kei Hang K Chan; Alexander P Reiner; Tamar Sofer
Journal:  Genet Epidemiol       Date:  2018-10-15       Impact factor: 2.135

Review 4.  Ethnic Differences in Iron Status.

Authors:  Wanhui Kang; Alexa Barad; Andrew G Clark; Yiqin Wang; Xu Lin; Zhenglong Gu; Kimberly O O'Brien
Journal:  Adv Nutr       Date:  2021-10-01       Impact factor: 8.701

5.  The genetic structure and adaptation of Andean highlanders and Amazonians are influenced by the interplay between geography and culture.

Authors:  Víctor Borda; Isabela Alvim; Marla Mendes; Carolina Silva-Carvalho; Giordano B Soares-Souza; Thiago P Leal; Vinicius Furlan; Marilia O Scliar; Roxana Zamudio; Camila Zolini; Gilderlanio S Araújo; Marcelo R Luizon; Carlos Padilla; Omar Cáceres; Kelly Levano; César Sánchez; Omar Trujillo; Pedro O Flores-Villanueva; Michael Dean; Silvia Fuselli; Moara Machado; Pedro E Romero; Francesca Tassi; Meredith Yeager; Timothy D O'Connor; Robert H Gilman; Eduardo Tarazona-Santos; Heinner Guio
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-04       Impact factor: 12.779

6.  ZRANB3 is an African-specific type 2 diabetes locus associated with beta-cell mass and insulin response.

Authors:  Adebowale A Adeyemo; Norann A Zaghloul; Guanjie Chen; Ayo P Doumatey; Carmen C Leitch; Timothy L Hostelley; Jessica E Nesmith; Jie Zhou; Amy R Bentley; Daniel Shriner; Olufemi Fasanmade; Godfrey Okafor; Benjamin Eghan; Kofi Agyenim-Boateng; Settara Chandrasekharappa; Jokotade Adeleye; William Balogun; Samuel Owusu; Albert Amoah; Joseph Acheampong; Thomas Johnson; Johnnie Oli; Clement Adebamowo; Francis Collins; Georgia Dunston; Charles N Rotimi
Journal:  Nat Commun       Date:  2019-07-19       Impact factor: 14.919

7.  Mendelian Randomization Analysis of Hemoglobin A1c as a Risk Factor for Coronary Artery Disease.

Authors:  Aaron Leong; Ji Chen; Eleanor Wheeler; Marie-France Hivert; Ching-Ti Liu; Jordi Merino; Josée Dupuis; E Shyong Tai; Jerome I Rotter; Jose C Florez; Inês Barroso; James B Meigs
Journal:  Diabetes Care       Date:  2019-01-18       Impact factor: 17.152

8.  A Long Non-coding RNA, LOC157273, Is an Effector Transcript at the Chromosome 8p23.1-PPP1R3B Metabolic Traits and Type 2 Diabetes Risk Locus.

Authors:  Alisa K Manning; Anton Scott Goustin; Erica L Kleinbrink; Pattaraporn Thepsuwan; Juan Cai; Donghong Ju; Aaron Leong; Miriam S Udler; James Bentley Brown; Mark O Goodarzi; Jerome I Rotter; Robert Sladek; James B Meigs; Leonard Lipovich
Journal:  Front Genet       Date:  2020-07-10       Impact factor: 4.599

9.  Purification of pancreatic endocrine subsets reveals increased iron metabolism in beta cells.

Authors:  C Berthault; W Staels; R Scharfmann
Journal:  Mol Metab       Date:  2020-08-05       Impact factor: 7.422

Review 10.  Current State of Evidence: Influence of Nutritional and Nutrigenetic Factors on Immunity in the COVID-19 Pandemic Framework.

Authors:  Sebastià Galmés; Francisca Serra; Andreu Palou
Journal:  Nutrients       Date:  2020-09-08       Impact factor: 5.717

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