| Literature DB >> 28330130 |
Ajay Kumar1, Ritu Singh1, Akhilesh Yadav1, D D Giri1, P K Singh1, Kapil D Pandey2.
Abstract
Fourteen endophytic bacterial isolates were isolated from the rhizome of Curcuma longa L. were characterized on the basis of morphology, biochemical characteristics and 16S rRNA gene sequence analysis. The isolates were identified to six strains namely Bacillus cereus (ECL1), Bacillus thuringiensis (ECL2), Bacillus sp. (ECL3), Bacillus pumilis (ECL4), Pseudomonas putida (ECL5), and Clavibacter michiganensis (ECL6). All the strains produced IAA and solubilized phosphate and only two strains produced siderophore (ECL3 and ECL5) during plant growth promoting trait analysis. All the endophytic strains utilized glucose, sucrose and yeast extract as a carbon source where as glycine, alanine, cystine and glutamine as nitrogen source. The strains were mostly sensitive to antibiotic chloramphenicol followed by erythromycin while resistant to polymixin B. The endophytic strains effectively inhibit the growth of Escherichia coli, Klebsiella pneumoniae and some of the fungal strain like Fusarium solani and Alterneria alternata. The strain ECL2 and ECL4 tolerated maximum 8 % of NaCl concentration where as strains ECL5 and ECL6 6 % in salinity tolerance.Entities:
Keywords: 16S rRNA analysis; Antimicrobial activity; Curcuma longa; Endophyte; Substrate utilization
Year: 2016 PMID: 28330130 PMCID: PMC4752947 DOI: 10.1007/s13205-016-0393-y
Source DB: PubMed Journal: 3 Biotech ISSN: 2190-5738 Impact factor: 2.406
Bochemical characterization of selected endophytic bacterial strain of turmeric rhizome
|
|
|
|
|
|
| |
|---|---|---|---|---|---|---|
| Gram staining | +ve | −ve | +ve | +ve | −ve | +ve |
| Shape | Rod | Rod | Rod | Rod | Rod | Rod |
| Catalase | +ve | −ve | +ve | +ve | +ve | +ve |
| Oxidase | −ve | −ve | +ve | −ve | +ve | +ve |
| Glucose | +ve | +ve | +ve | +ve | +ve | +ve |
| Lactose | −ve | −ve | +ve | +ve | −ve | −ve |
| Maltose | +ve | −ve | +ve | −ve | +ve | −ve |
| Mannitol | +ve | −ve | +ve | −ve | −ve | −ve |
|
| +ve | −ve | +ve | −ve | −ve | −ve |
| Sucrose | +ve | −ve | +ve | +ve | −ve | +ve |
| Nitrate reduction | +ve | −ve | +ve | −ve | −ve | +ve |
| H2S production | −ve | +ve | −ve | −ve | +ve | −ve |
| Starch hydrolysis | +ve | −ve | +ve | +ve | +ve | +ve |
| Salt tolerence | 7 % | 8 % | 7 % | 8 % | 6 % | 6 % |
+ve, positive; −ve, negative
Closest relative of the isolated strains as revealed by 16S rRNA gene sequencing
| S. No. | Source | Strains | Accession number | Nearest phylogenetic neighbour | Similarity (%) |
|---|---|---|---|---|---|
| 1 |
| ECL1 | KF793818 |
| 100 |
| 2 |
| ECL2 | KF793819 |
| 100 |
| 3 |
| ECL3 | KF793820 |
| 100 |
| 4 |
| ECL4 | KF793821 |
| 99 |
| 5 |
| ECL5 | KF793822 |
| 100 |
| 6 |
| ECL6 | KF793823 |
| 100 |
Fig. 1Phylogenetic tree from analysis of 16S rRNA gene sequence of the endophytic strains of C. longa strains using neighbor joining approach. Each number on a branch indicates the bootstrap confidence values correspond to the scale bar of branch lengths. GenBank accession numbers of nucleotide sequences are shown along with the name of bacterial strain. Phylogenetic analyses were conducted in MEGA 5
Characterization of selected bacterial isolates for plant growth promoting (PGP) traits
| IAA production | P. solubilization | Siderophore production | |
|---|---|---|---|
|
| +ve | +ve | −ve |
|
| +ve | −ve | −ve |
|
| +ve | +ve | +ve |
|
| +ve | +ve | −ve |
|
| +ve | +ve | +ve |
|
| +ve | −ve | −ve |
Antibiotic sensitivity, antibacterial activity and antifungal activity of endophytic strains of C. longa L.
| Bacterial strain | Antibiotic sensitivity (antibiotics inhibition zone in mm) | Antibacterial activity (inhibition zone in mm) | Antifungal activity (fungal growth inhibition) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chloramphenicol | Erythromycin | Rifampicin | Polymixin-B |
|
|
|
|
|
|
| |
| ECL1 | 26(S) | 22(S) | 16(S) | 13(S) | +13 | − | +11 |
|
|
|
|
| ECL2 | 23(S) | 19(S) | 14(S) | 0(R) | +14 | − | − |
|
|
|
|
| ECL3 | 25(S) | 20(S) | 13(S) | 11(I) | +11 | − | +10 |
|
| − | − |
| ECL4 | 19(S) | 17(S) | 0(R) | 0(R) | +10 | − | +9 | + | + | + | + |
| ECL5 | 22(S) | 19(S) | 11(1) | 12(I) | +16 | − | +14 | + | + | + | + |
| ECL6 | 21(S) | 16(S) | 12(I) | 0(R) | +9 | − | − | + | + | − | − |
+, presence of activity
−, absence of inhibition zone