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Literature DB >> 28328918

Simultaneous quantification of protein order and disorder.

Pietro Sormanni¹, Damiano Piovesan², Gabriella T Heller¹, Massimiliano Bonomi¹, Predrag Kukic¹, Carlo Camilloni³, Monika Fuxreiter⁴, Zsuzsanna Dosztanyi⁵, Rohit V Pappu⁶, M Madan Babu⁷, Sonia Longhi⁸, Peter Tompa⁹, A Keith Dunker¹⁰, Vladimir N Uversky¹¹, Silvio C E Tosatto², Michele Vendruscolo¹.

Abstract

Entities: Chemical

Mesh：

Substances：
Proteins

Year: 2017 PMID： 28328918 DOI： 10.1038/nchembio.2331

Source DB: PubMed Journal: Nat Chem Biol ISSN： 1552-4450 Impact factor: 15.040

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25 in total

1. The revolution will not be crystallized: a new method sweeps through structural biology.

Authors: Ewen Callaway
Journal: Nature Date: 2015-09-10 Impact factor: 49.962

2. Simultaneous determination of protein structure and dynamics.

Authors: Kresten Lindorff-Larsen; Robert B Best; Mark A Depristo; Christopher M Dobson; Michele Vendruscolo
Journal: Nature Date: 2005-01-13 Impact factor: 49.962

3. Protein structure determination from NMR chemical shifts.

Authors: Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal: Proc Natl Acad Sci U S A Date: 2007-05-29 Impact factor: 11.205

4. Consistent blind protein structure generation from NMR chemical shift data.

Authors: Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H Arrowsmith; Thomas Szyperski; Gaetano T Montelione; David Baker; Ad Bax
Journal: Proc Natl Acad Sci U S A Date: 2008-03-07 Impact factor: 11.205

5. Biochemistry. Integrative structural biology.

Authors: Andrew B Ward; Andrej Sali; Ian A Wilson
Journal: Science Date: 2013-02-22 Impact factor: 47.728

6. Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR.

Authors: R Bryn Fenwick; Henry van den Bedem; James S Fraser; Peter E Wright
Journal: Proc Natl Acad Sci U S A Date: 2014-01-13 Impact factor: 11.205

7. Finding Our Way in the Dark Proteome.

Authors: Asmit Bhowmick; David H Brookes; Shane R Yost; H Jane Dyson; Julie D Forman-Kay; Daniel Gunter; Martin Head-Gordon; Gregory L Hura; Vijay S Pande; David E Wemmer; Peter E Wright; Teresa Head-Gordon
Journal: J Am Chem Soc Date: 2016-07-19 Impact factor: 15.419

8. In-cell NMR characterization of the secondary structure populations of a disordered conformation of α-synuclein within E. coli cells.

Authors: Christopher A Waudby; Carlo Camilloni; Anthony W P Fitzpatrick; Lisa D Cabrita; Christopher M Dobson; Michele Vendruscolo; John Christodoulou
Journal: PLoS One Date: 2013-08-26 Impact factor: 3.240

9. A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding.

Authors: Lisa D Cabrita; AnaÏs M E Cassaignau; Helene M M Launay; Christopher A Waudby; Tomasz Wlodarski; Carlo Camilloni; Maria-Evangelia Karyadi; Amy L Robertson; Xiaolin Wang; Anne S Wentink; Luke Goodsell; Cheryl A Woolhead; Michele Vendruscolo; Christopher M Dobson; John Christodoulou
Journal: Nat Struct Mol Biol Date: 2016-02-29 Impact factor: 15.369

10. Metainference: A Bayesian inference method for heterogeneous systems.

Authors: Massimiliano Bonomi; Carlo Camilloni; Andrea Cavalli; Michele Vendruscolo
Journal: Sci Adv Date: 2016-01-22 Impact factor: 14.136

29 in total

Review 1. Generic nature of the condensed states of proteins.

Authors: Monika Fuxreiter; Michele Vendruscolo
Journal: Nat Cell Biol Date: 2021-06-09 Impact factor: 28.824

2. Generation of the configurational ensemble of an intrinsically disordered protein from unbiased molecular dynamics simulation.

Authors: Utsab R Shrestha; Puneet Juneja; Qiu Zhang; Viswanathan Gurumoorthy; Jose M Borreguero; Volker Urban; Xiaolin Cheng; Sai Venkatesh Pingali; Jeremy C Smith; Hugh M O'Neill; Loukas Petridis
Journal: Proc Natl Acad Sci U S A Date: 2019-09-23 Impact factor: 11.205

3. Metapredict: a fast, accurate, and easy-to-use predictor of consensus disorder and structure.

Authors: Ryan J Emenecker; Daniel Griffith; Alex S Holehouse
Journal: Biophys J Date: 2021-09-02 Impact factor: 3.699

Review 4. Interactions between the Intrinsically Disordered Proteins β-Synuclein and α-Synuclein.

Authors: Jonathan K Williams; Xue Yang; Jean Baum
Journal: Proteomics Date: 2018-09-09 Impact factor: 3.984

5. Prediction of protein disorder based on IUPred.

Authors: Zsuzsanna Dosztányi
Journal: Protein Sci Date: 2017-11-16 Impact factor: 6.725

6. The sequence-ensemble relationship in fuzzy protein complexes.

Authors: San Hadži; Remy Loris; Jurij Lah
Journal: Proc Natl Acad Sci U S A Date: 2021-09-14 Impact factor: 11.205

7. MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.

Authors: Damiano Piovesan; Francesco Tabaro; Lisanna Paladin; Marco Necci; Ivan Micetic; Carlo Camilloni; Norman Davey; Zsuzsanna Dosztányi; Bálint Mészáros; Alexander M Monzon; Gustavo Parisi; Eva Schad; Pietro Sormanni; Peter Tompa; Michele Vendruscolo; Wim F Vranken; Silvio C E Tosatto
Journal: Nucleic Acids Res Date: 2018-01-04 Impact factor: 16.971