| Literature DB >> 28327786 |
Nadja de Lima Santana1,2, Jamile Leão Rêgo1,2, Joyce Moura Oliveira1, Lucas Frederico de Almeida1, Marcos Braz1,2, Lídia Maria Medeiros Machado3, Paulo Roberto Lima Machado3,1,2, Léa Cristina Castellucci3,1,2.
Abstract
BACKGROUND: Leprosy or hansen's disease is a spectral disease whose clinical forms mostly depends on host's immune and genetic factors. Different Toll-like receptors (TLR) variants have been described associated with leprosy, but with some lack of replication across different populations.Entities:
Mesh:
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Year: 2017 PMID: 28327786 PMCID: PMC5354609 DOI: 10.1590/0074-02760160366
Source DB: PubMed Journal: Mem Inst Oswaldo Cruz ISSN: 0074-0276 Impact factor: 2.743
Details of the TLR1, 2 and 4 genotyped single nucleotide polymorphisms as recorded in 1000 Genomes, GRCh37 assembly
| GENE/SNP | Chrossome: physical position | Alleles | Variation type |
|---|---|---|---|
| TLR1 | |||
| rs4833095 | 4: 38799710 | C/T | Missense variant |
| rs5743551 | 4: 38807654 | C/T | Intron variant |
| TLR2 | |||
| rs3804099 | 4: 154624656 | C/T | Synonymous variant |
| rs7656411 | 4: 154627655 | G/T | Downstream gene variant |
| TLR4 | |||
| rs1927914 | 9: 120464725 | A/G | Upstream gene variant |
| rs1927911 | 9: 120470054 | A/G | Intron variant |
TLR: Toll-like receptors.
Allele and genotype frequencies of the TLR1, 2 and 4 markers between cases and controls
| Gene/marker | Allele/genotype | Cases n(%) | Controls n(%) | Total (%) |
|---|---|---|---|---|
|
| ||||
| C | 382(58,8%) | 407(61,9%) | 789(60,3%) | |
| T | 268(41,2%) | 251(438,1%) | 519(39,7%) | |
| CC | 117(36,0%) | 122(37,1%) | 239(36,5%) | |
| CT | 148(45,5%) | 163(49,5%) | 311(47,6%) | |
| TT | 60(18,5%) | 44(13,4%) | 104(15,9%) | |
|
| ||||
| C | 387(59,2%) | 410(61,9%) | 797(60,6%) | |
| T | 267(40,8%) | 252(38,1%) | 519(39,4%) | |
| CC | 121(37,0%) | 127(38,4%) | 248(37,7%) | |
| CT | 145(44,3%) | 156(47,1%) | 301(45,7%) | |
| TT | 61(18,7%) | 48(14,5%) | 109(16,6%) | |
|
| ||||
| C | 325(50,3%) | 372(56,5%) | 697(53,5%) | |
| T | 321(49,7%) | 286(43,5%) | 607(46,5%) | |
| CC | 76(23,5%) | 105(31,9%) | 181(27,8%) | |
| CT | 173(53,6%) | 162(49,2%) | 335(51,4%) | |
| TT | 74(22,9%) | 62(18,8%) | 136(20,9%) | |
|
| ||||
| G | 269(44,1%) | 267(44,4%) | 536(44,2%) | |
| T | 341(55,9%) | 335(55,6%) | 676(55,8%) | |
| GG | 57(18,7%) | 56(18,6%) | 183(30,2%) | |
| GT | 155(50,8%) | 155(51,5%) | 310(51,2%) | |
| TT | 93(30,5%) | 90(29,9%) | 113(18,6%) | |
|
| ||||
| A | 269(40,4%) | 269(40,4%) | 478(40,9%) | |
| G | 397(59,6%) | 397(59,6%) | 690(59,1%) | |
| AA | 52(15,6%) | 52(15,6%) | 212(36,3%) | |
| AG | 165(49,5%) | 165(49,5%) | 266(45,5%) | |
| GG | 116(34,8%) | 116(34,8%) | 106(18,2%) | |
|
| ||||
| A | 337(50,9%) | 223(46,5%) | 560(49,0%) | |
| G | 325(49,1%) | 257(53,5%) | 582(51,0%) | |
| AA | 89(26,9%) | 59(24,6%) | 148(25,9%) | |
| AG | 159(48,0%) | 105(43,8%) | 264(46,2%) | |
| GG | 83(25,1%) | 76(31,7%) | 159(27,8%) | |
TLR: Toll-like receptors.
Results of logistic regression analyses for the genotyped Toll-like receptors (TLR) polymorphisms
| Cases
| |||
|---|---|---|---|
|
| Odds ratio (OR) | Confidence interval (CI 95%) | p value |
| C | 0,879 | 0,70-1,09 | 0,256 |
| T | 1,136 | 0,91-1,41 | 0,256 |
| C/T X T/T | 0,665 | 0,42-1,04 | 0,075 |
| C/C X T/T | 0,703 | 0,44-1,11 | 0,137 |
|
| OR | CI (95%) | p value |
| C | 0,894 | 0,72-1,11 | 0,316 |
| T | 1,117 | 0,89-1,38 | 0,316 |
| CT X T/T | 0,731 | 0,47-1,13 | 0,164 |
| C/C X T/T | 0,749 | 0,47-1,17 | 0,212 |
|
| OR | CI (95%) | p value |
| C | 0,771 | 0,61-0,96 | 0,022 |
| T | 1,296 | 1,03-1,62 | 0,022 |
| C/T X T/T | 0,894 | 0,59-1,33 | 0,585 |
| C/C X T/T | 0,606 | 0,38-0,94 | 0,029 |
|
| OR | CI (95%) | p value |
| G | 0,989 | 0,78-1,24 | 0,928 |
| T | 1,01 | 0,80-1,27 | 0,928 |
| GT X T/T | 0,967 | 0,67-1,39 | 0,86 |
| G/G X T/T | 0,985 | 0,61-1,57 | 0,95 |
|
| OR | CI (95%) | p value |
| A | 0,952 | 0,75-1,19 | 0,678 |
| G | 1,049 | 0,83-1,31 | 0,678 |
| A/G X G/G | 1,351 | 0,93-1,95 | 0,107 |
| A/A X G/G | 0,796 | 0,49-1,27 | 0,341 |
|
| OR | CI (95%) | p value |
| A | 1,18 | 0,94-1,48 | 0,153 |
| G | 0,847 | 0,67-1,06 | 0,153 |
| A/G X G/G | 1,386 | 0,93-2,06 | 0,107 |
| A/A X G/G | 1,381 | 0,87-2,17 | 0,162 |
Fig 1: serum levels of IL-12p40 (A, D), IL-17 (B, E) and MCP-1 (C, F) across different TLR1 rs4833095 genotypes. The non-parametric tests of Kruskal-Wallis and Mann-Whitney were used to analyse the statistical differences (N = 52). *p < 0.05; **p < 0.01; ***p < 0.001.
Fig. 2: serum levels of IL-12p40 (A, C) and MCP-1 (B, D) comparing different TLR1 rs5743551 genotypes. The non-parametric tests of Kruskal-Wallis and Mann-Whitney were used to analyse the statistical differences (N = 52). *p < 0.05; **p < 0.01; ***p < 0.001.
Fig. 3: serum levels of IL-17 (A, C) and IL-6 (B, D) according to different TLR2 rs3804099 genotypes; and CXCL-10 across TLR2 rs7656411 genotypes (E, F). The non-parametric tests of Kruskal-Wallis and Mann-Whitney were used to analyse the statistical differences (N = 52). *p < 0.05.
Fig. 4: serum levels of IL-17 (A, C) and IL-1β (B, D) according to different TLR4 rs1927914 genotypes. Kruskal-Wallis and Mann-Whitney tests were used to analyse the statistical differences (N = 52). *p < 0.05.