Literature DB >> 28319009

The Unique Domain Forms a Fuzzy Intramolecular Complex in Src Family Kinases.

Miguel Arbesú1, Mariano Maffei1, Tiago N Cordeiro2, João M C Teixeira1, Yolanda Pérez1, Pau Bernadó3, Serge Roche4, Miquel Pons5.   

Abstract

The N-terminal regulatory region of c-Src including the SH4, Unique, and SH3 domains adopts a compact, yet highly dynamic, structure that can be described as an intramolecular fuzzy complex. Most of the long-range interactions within the Unique domain are also observed in constructs lacking the structured SH3, indicating a considerable degree of preorganization of the disordered Unique domain. Here we report that members of the Src family of kinases (SFK) share well-conserved sequence features involving aromatic residues in their Unique domains. This observation contrasts with the supposed lack of sequence homology implied by the name of these domains and suggests that the other members of SFK also have a regulatory region involving their Unique domains. We argue that the Unique domain of each SFK is sensitive to specific input signals, encoded by each specific sequence, but the entire family shares a common mechanism for connecting the disordered and structured domains.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  SH3; SH4; Src family kinases; c-Src; fuzzy complex; intrinsically disordered proteins; preorganization; protein scaffold; unique domain

Mesh:

Substances:

Year:  2017        PMID: 28319009     DOI: 10.1016/j.str.2017.02.011

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  27 in total

1.  Generation of the configurational ensemble of an intrinsically disordered protein from unbiased molecular dynamics simulation.

Authors:  Utsab R Shrestha; Puneet Juneja; Qiu Zhang; Viswanathan Gurumoorthy; Jose M Borreguero; Volker Urban; Xiaolin Cheng; Sai Venkatesh Pingali; Jeremy C Smith; Hugh M O'Neill; Loukas Petridis
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-23       Impact factor: 11.205

Review 2.  Dynamic regulatory features of the protein tyrosine kinases.

Authors:  Neha Amatya; David Yin-Wei Lin; Amy H Andreotti
Journal:  Biochem Soc Trans       Date:  2019-08-08       Impact factor: 5.407

3.  Sequence Effects on Size, Shape, and Structural Heterogeneity in Intrinsically Disordered Proteins.

Authors:  Upayan Baul; Debayan Chakraborty; Mauro L Mugnai; John E Straub; D Thirumalai
Journal:  J Phys Chem B       Date:  2019-04-15       Impact factor: 2.991

4.  Physics-driven coarse-grained model for biomolecular phase separation with near-quantitative accuracy.

Authors:  Jerelle A Joseph; Aleks Reinhardt; Anne Aguirre; Pin Yu Chew; Kieran O Russell; Jorge R Espinosa; Adiran Garaizar; Rosana Collepardo-Guevara
Journal:  Nat Comput Sci       Date:  2021-11-22

Review 5.  Remodeling of the Plasma Membrane by Surface-Bound Protein Monomers and Oligomers: The Critical Role of Intrinsically Disordered Regions.

Authors:  Mussie K Araya; Yong Zhou; Alemayehu A Gorfe
Journal:  J Membr Biol       Date:  2022-08-05       Impact factor: 2.426

6.  Editorial: Fuzzy Interactions: Many Facets of Protein Binding.

Authors:  Damiano Piovesan; Miguel Arbesú; Monika Fuxreiter; Miquel Pons
Journal:  Front Mol Biosci       Date:  2022-06-20

Review 7.  Emerging role for SRC family kinases in junction dynamics during spermatogenesis.

Authors:  Xiang Xiao; Yue Yang; Baiping Mao; C Yan Cheng; Ya Ni
Journal:  Reproduction       Date:  2019-03       Impact factor: 3.906

8.  Maximum Entropy Optimized Force Field for Intrinsically Disordered Proteins.

Authors:  Andrew P Latham; Bin Zhang
Journal:  J Chem Theory Comput       Date:  2019-12-13       Impact factor: 6.006

9.  Structural Analyses of Intrinsically Disordered Proteins by Small-Angle X-Ray Scattering.

Authors:  Amin Sagar; Dmitri Svergun; Pau Bernadó
Journal:  Methods Mol Biol       Date:  2020

Review 10.  The Src-family Kinase Lyn in Immunoreceptor Signaling.

Authors:  Ben F Brian; Tanya S Freedman
Journal:  Endocrinology       Date:  2021-10-01       Impact factor: 5.051

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