Literature DB >> 28316874

Computational Drug Repositioning Using Continuous Self-Controlled Case Series.

Zhaobin Kuang1, James Thomson2, Michael Caldwell3, Peggy Peissig3, Ron Stewart2, David Page1.   

Abstract

Computational Drug Repositioning (CDR) is the task of discovering potential new indications for existing drugs by mining large-scale heterogeneous drug-related data sources. Leveraging the patient-level temporal ordering information between numeric physiological measurements and various drug prescriptions provided in Electronic Health Records (EHRs), we propose a Continuous Self-controlled Case Series (CSCCS) model for CDR. As an initial evaluation, we look for drugs that can control Fasting Blood Glucose (FBG) level in our experiments. Applying CSCCS to the Marshfield Clinic EHR, well-known drugs that are indicated for controlling blood glucose level are rediscovered. Furthermore, some drugs with recent literature support for the potential effect of blood glucose level control are also identified.

Entities:  

Keywords:  Computational Drug Repositioning; Longitudinal Data; Self-Controlled Case Series

Year:  2016        PMID: 28316874      PMCID: PMC5351812          DOI: 10.1145/2939672.2939715

Source DB:  PubMed          Journal:  KDD        ISSN: 2154-817X


  34 in total

1.  The relationship of vitamin B12 to carbohydrate metabolism and diabetes mellitus.

Authors:  B F CHOW; H H STONE
Journal:  Am J Clin Nutr       Date:  1957 Jul-Aug       Impact factor: 7.045

2.  Risk factors of vitamin B(12) deficiency in patients receiving metformin.

Authors:  Rose Zhao-Wei Ting; Cheuk Chun Szeto; Michael Ho-Ming Chan; Kwok Kuen Ma; Kai Ming Chow
Journal:  Arch Intern Med       Date:  2006-10-09

3.  Estimating regression models with unknown break-points.

Authors:  Vito M R Muggeo
Journal:  Stat Med       Date:  2003-10-15       Impact factor: 2.373

4.  Fenofibrate and dipyridamole treatments in low-doses either alone or in combination blunted the development of nephropathy in diabetic rats.

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Journal:  Pharmacol Res       Date:  2014-09-27       Impact factor: 7.658

Review 5.  Computational drug repositioning: from data to therapeutics.

Authors:  M R Hurle; L Yang; Q Xie; D K Rajpal; P Sanseau; P Agarwal
Journal:  Clin Pharmacol Ther       Date:  2013-01-15       Impact factor: 6.875

6.  Development and evaluation of a common data model enabling active drug safety surveillance using disparate healthcare databases.

Authors:  Stephanie J Reisinger; Patrick B Ryan; Donald J O'Hara; Gregory E Powell; Jeffery L Painter; Edward N Pattishall; Jonathan A Morris
Journal:  J Am Med Inform Assoc       Date:  2010 Nov-Dec       Impact factor: 4.497

7.  Effect of antibiotics as cholesterol-lowering agents.

Authors:  David J A Jenkins; Cyril W C Kendall; Maryam Hamidi; Edward Vidgen; Dorothea Faulkner; Tina Parker; Nalini Irani; Thomas M S Wolever; Ignatius Fong; Peter Kopplin; Philip W Connelly; Andrew Onderdonk; A Venket Rao
Journal:  Metabolism       Date:  2005-01       Impact factor: 8.694

8.  Hyperglycemic effect of hydralazine in rats.

Authors:  T Satoh; S Hara; M Takashima; H Kitagawa
Journal:  J Pharmacobiodyn       Date:  1980-08

9.  The impact of thiamine treatment in the diabetes mellitus.

Authors:  Khanh Vinh Quoc Luong; Lan Thi Hoang Nguyen
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10.  A side effect resource to capture phenotypic effects of drugs.

Authors:  Michael Kuhn; Monica Campillos; Ivica Letunic; Lars Juhl Jensen; Peer Bork
Journal:  Mol Syst Biol       Date:  2010-01-19       Impact factor: 11.429

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  6 in total

1.  The emerging landscape of health research based on biobanks linked to electronic health records: Existing resources, statistical challenges, and potential opportunities.

Authors:  Lauren J Beesley; Maxwell Salvatore; Lars G Fritsche; Anita Pandit; Arvind Rao; Chad Brummett; Cristen J Willer; Lynda D Lisabeth; Bhramar Mukherjee
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2.  A Machine-Learning-Based Drug Repurposing Approach Using Baseline Regularization.

Authors:  Zhaobin Kuang; Yujia Bao; James Thomson; Michael Caldwell; Peggy Peissig; Ron Stewart; Rebecca Willett; David Page
Journal:  Methods Mol Biol       Date:  2019

3.  Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data.

Authors:  Zhaobin Kuang; James Thomson; Michael Caldwell; Peggy Peissig; Ron Stewart; David Page
Journal:  IJCAI (U S)       Date:  2016-07

Review 4.  Computational drug repurposing based on electronic health records: a scoping review.

Authors:  Nansu Zong; Andrew Wen; Sungrim Moon; Sunyang Fu; Liwei Wang; Yiqing Zhao; Yue Yu; Ming Huang; Yanshan Wang; Gang Zheng; Michelle M Mielke; James R Cerhan; Hongfang Liu
Journal:  NPJ Digit Med       Date:  2022-06-14

5.  A Simple Text Mining Approach for Ranking Pairwise Associations in Biomedical Applications.

Authors:  Finn Kuusisto; John Steill; Zhaobin Kuang; James Thomson; David Page; Ron Stewart
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2017-07-26

6.  Leveraging Population-Based Clinical Quantitative Phenotyping for Drug Repositioning.

Authors:  Adam S Brown; Danielle Rasooly; Chirag J Patel
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2018-01-24
  6 in total

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