Literature DB >> 23443757

Computational drug repositioning: from data to therapeutics.

M R Hurle1, L Yang, Q Xie, D K Rajpal, P Sanseau, P Agarwal.   

Abstract

Traditionally, most drugs have been discovered using phenotypic or target-based screens. Subsequently, their indications are often expanded on the basis of clinical observations, providing additional benefit to patients. This review highlights computational techniques for systematic analysis of transcriptomics (Connectivity Map, CMap), side effects, and genetics (genome-wide association study, GWAS) data to generate new hypotheses for additional indications. We also discuss data domains such as electronic health records (EHRs) and phenotypic screening that we consider promising for novel computational repositioning methods.

Entities:  

Mesh:

Year:  2013        PMID: 23443757     DOI: 10.1038/clpt.2013.1

Source DB:  PubMed          Journal:  Clin Pharmacol Ther        ISSN: 0009-9236            Impact factor:   6.875


  116 in total

1.  From Molecules to Patients: The Clinical Applications of Translational Bioinformatics.

Authors:  K Regan; P R O Payne
Journal:  Yearb Med Inform       Date:  2015-08-13

2.  Towards drug repositioning: a unified computational framework for integrating multiple aspects of drug similarity and disease similarity.

Authors:  Ping Zhang; Fei Wang; Jianying Hu
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

3.  PhenoPredict: A disease phenome-wide drug repositioning approach towards schizophrenia drug discovery.

Authors:  Rong Xu; QuanQiu Wang
Journal:  J Biomed Inform       Date:  2015-07-04       Impact factor: 6.317

4.  Moving Toward Integrating Gene Expression Profiling Into High-Throughput Testing: A Gene Expression Biomarker Accurately Predicts Estrogen Receptor α Modulation in a Microarray Compendium.

Authors:  Natalia Ryan; Brian Chorley; Raymond R Tice; Richard Judson; J Christopher Corton
Journal:  Toxicol Sci       Date:  2016-02-10       Impact factor: 4.849

5.  Drug repositioning for prostate cancer: using a data-driven approach to gain new insights.

Authors:  QuanQiu Wang; Rong Xu
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

6.  Large-scale automatic extraction of side effects associated with targeted anticancer drugs from full-text oncological articles.

Authors:  Rong Xu; QuanQiu Wang
Journal:  J Biomed Inform       Date:  2015-03-27       Impact factor: 6.317

Review 7.  The neuroimmune transcriptome and alcohol dependence: potential for targeted therapies.

Authors:  Anna Warden; Emma Erickson; Gizelle Robinson; R Adron Harris; R Dayne Mayfield
Journal:  Pharmacogenomics       Date:  2016-12-05       Impact factor: 2.533

8.  Teaching an old dog new tricks: drug repositioning in small cell lung cancer.

Authors:  Jing Wang; Lauren Averett Byers
Journal:  Cancer Discov       Date:  2013-12       Impact factor: 39.397

9.  Computational chemogenomics: is it more than inductive transfer?

Authors:  J B Brown; Yasushi Okuno; Gilles Marcou; Alexandre Varnek; Dragos Horvath
Journal:  J Comput Aided Mol Des       Date:  2014-04-27       Impact factor: 3.686

10.  Identification of Nitazoxanide as a Group I Metabotropic Glutamate Receptor Negative Modulator for the Treatment of Neuropathic Pain: An In Silico Drug Repositioning Study.

Authors:  Ni Ai; Richard D Wood; William J Welsh
Journal:  Pharm Res       Date:  2015-03-12       Impact factor: 4.200

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