Literature DB >> 28316461

Convex Modeling of Interactions with Strong Heredity.

Asad Haris1, Daniela Witten2, Noah Simon1.   

Abstract

We consider the task of fitting a regression model involving interactions among a potentially large set of covariates, in which we wish to enforce strong heredity. We propose FAMILY, a very general framework for this task. Our proposal is a generalization of several existing methods, such as VANISH [Radchenko and James, 2010], hierNet [Bien et al., 2013], the all-pairs lasso, and the lasso using only main effects. It can be formulated as the solution to a convex optimization problem, which we solve using an efficient alternating directions method of multipliers (ADMM) algorithm. This algorithm has guaranteed convergence to the global optimum, can be easily specialized to any convex penalty function of interest, and allows for a straightforward extension to the setting of generalized linear models. We derive an unbiased estimator of the degrees of freedom of FAMILY, and explore its performance in a simulation study and on an HIV sequence data set.

Entities:  

Year:  2015        PMID: 28316461      PMCID: PMC5353363          DOI: 10.1080/10618600.2015.1067217

Source DB:  PubMed          Journal:  J Comput Graph Stat        ISSN: 1061-8600            Impact factor:   2.302


  5 in total

1.  Penalized logistic regression for detecting gene interactions.

Authors:  Mee Young Park; Trevor Hastie
Journal:  Biostatistics       Date:  2007-04-11       Impact factor: 5.899

2.  Genotypic predictors of human immunodeficiency virus type 1 drug resistance.

Authors:  Soo-Yon Rhee; Jonathan Taylor; Gauhar Wadhera; Asa Ben-Hur; Douglas L Brutlag; Robert W Shafer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-25       Impact factor: 11.205

3.  Interaction Screening for Ultra-High Dimensional Data.

Authors:  Ning Hao; Hao Helen Zhang
Journal:  J Am Stat Assoc       Date:  2014       Impact factor: 5.033

4.  Screen and clean: a tool for identifying interactions in genome-wide association studies.

Authors:  Jing Wu; Bernie Devlin; Steven Ringquist; Massimo Trucco; Kathryn Roeder
Journal:  Genet Epidemiol       Date:  2010-04       Impact factor: 2.135

5.  A LASSO FOR HIERARCHICAL INTERACTIONS.

Authors:  Jacob Bien; Jonathan Taylor; Robert Tibshirani
Journal:  Ann Stat       Date:  2013-06       Impact factor: 4.028

  5 in total
  7 in total

1.  Nonparametric regression with adaptive truncation via a convex hierarchical penalty.

Authors:  Asad Haris; Ali Shojaie; Noah Simon
Journal:  Biometrika       Date:  2018-12-13       Impact factor: 2.445

2.  Selection of nonlinear interactions by a forward stepwise algorithm: Application to identifying environmental chemical mixtures affecting health outcomes.

Authors:  Naveen N Narisetty; Bhramar Mukherjee; Yin-Hsiu Chen; Richard Gonzalez; John D Meeker
Journal:  Stat Med       Date:  2018-12-26       Impact factor: 2.373

3.  Structured detection of interactions with the directed lasso.

Authors:  Hristina Pashova; Michael LeBlanc; Charles Kooperberg
Journal:  Stat Biosci       Date:  2016-11-29

4.  Generalized Hierarchical Sparse Model for Arbitrary-Order Interactive Antigenic Sites Identification in Flu Virus Data.

Authors:  Lei Han; Yu Zhang; Xiu-Feng Wan; Tong Zhang
Journal:  KDD       Date:  2016-08

5.  Bayesian Factor Analysis for Inference on Interactions.

Authors:  Federico Ferrari; David B Dunson
Journal:  J Am Stat Assoc       Date:  2020-04-20       Impact factor: 5.033

6.  An Ultrahigh-Dimensional Mapping Model of High-order Epistatic Networks for Complex Traits.

Authors:  Kirk Gosik; Lidan Sun; Vernon M Chinchilli; Rongling Wu
Journal:  Curr Genomics       Date:  2018-08       Impact factor: 2.236

Review 7.  Powering Research through Innovative Methods for Mixtures in Epidemiology (PRIME) Program: Novel and Expanded Statistical Methods.

Authors:  Bonnie R Joubert; Marianthi-Anna Kioumourtzoglou; Toccara Chamberlain; Hua Yun Chen; Chris Gennings; Mary E Turyk; Marie Lynn Miranda; Thomas F Webster; Katherine B Ensor; David B Dunson; Brent A Coull
Journal:  Int J Environ Res Public Health       Date:  2022-01-26       Impact factor: 3.390

  7 in total

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