Literature DB >> 28311977

Methods for detecting non-randomness in species co-occurrences: a contribution.

J B Wilson1.   

Abstract

Comparison of co-occurrences between species on a group of islands with those expected from a randombased null model could provide evidence on community structure. However, it is difficult to decide on the appropriate null model. Gilpin and Diamond proposed a model and a test for departure from it, but this test is shown to indicate significant structure even when applied to a matrix of random numbers. An alternative method is suggested, using the distribution of Gilpin and Diamond's deviation as test statistic, but determining the expected distribution by Monto Carlo simulation, and using many such simulations as a randomisation test of significance. The null model used accepts the observed totals of occurrences for islands and species; it therefore offers a somewhat conservative test. Applied to the Vanuatu bird data that Gilpin and Diamond used, significant departure from a null model is seen, but with an excess of extreme negative associations, the opposite result from that given by Gilpin and Diamond's method. It is not possible to tell whether the negative associations are due to autecology, biogeography, or to interactions between species.

Keywords:  Bird distributions; Community structure; Neutral models; Null models; Species co-occurrence

Year:  1987        PMID: 28311977     DOI: 10.1007/BF00379419

Source DB:  PubMed          Journal:  Oecologia        ISSN: 0029-8549            Impact factor:   3.225


  2 in total

1.  Factors contributing to non-randomness in species Co-occurrences on Islands.

Authors:  Michael E Gilpin; Jared M Diamond
Journal:  Oecologia       Date:  1982-01       Impact factor: 3.225

2.  Examination of the "null" model of connor and simberloff for species co-occurrences on Islands.

Authors:  Jared M Diamond; Michael E Gilpin
Journal:  Oecologia       Date:  1982-01       Impact factor: 3.225

  2 in total
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2.  Competitive exclusion, or species aggregation? : An aid in deciding.

Authors:  Lewi Stone; Alan Roberts
Journal:  Oecologia       Date:  1992-09       Impact factor: 3.225

3.  Comments on Wilson's Null Model.

Authors:  M E Gilpin; J M Diamond
Journal:  Oecologia       Date:  1987-11       Impact factor: 3.225

4.  A null model of guild proportionality, applied to stratification of a New Zealand temperate rain forest.

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5.  The checkerboard score and species distributions.

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Journal:  Oecologia       Date:  1990-11       Impact factor: 3.225

6.  Island-sharing by archipelago species.

Authors:  Alan Roberts; Lewis Stone
Journal:  Oecologia       Date:  1990-07       Impact factor: 3.225

7.  Rock pool algae: species composition determined by chance?

Authors:  J Bastow Wilson; R E James; J E Newman; T E Myers
Journal:  Oecologia       Date:  1992-08       Impact factor: 3.225

8.  Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data.

Authors:  Neo Christopher Chung; BłaŻej Miasojedow; Michał Startek; Anna Gambin
Journal:  BMC Bioinformatics       Date:  2019-12-24       Impact factor: 3.169

9.  Fast randomization of large genomic datasets while preserving alteration counts.

Authors:  Andrea Gobbi; Francesco Iorio; Kevin J Dawson; David C Wedge; David Tamborero; Ludmil B Alexandrov; Nuria Lopez-Bigas; Mathew J Garnett; Giuseppe Jurman; Julio Saez-Rodriguez
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