Literature DB >> 28301736

Epigenetic Regulation: A New Frontier for Biomedical Engineers.

Zhen Chen1,2, Shuai Li2, Shankar Subramaniam3, John Y-J Shyy2, Shu Chien2,3.   

Abstract

Gene expression in mammalian cells depends on the epigenetic status of the chromatin, including DNA methylation, histone modifications, promoter-enhancer interactions, and noncoding RNA-mediated regulation. The coordinated actions of these multifaceted regulations determine cell development, cell cycle regulation, cell state and fate, and the ultimate responses in health and disease. Therefore, studies of epigenetic modulations are critical for our understanding of gene regulation mechanisms at the molecular, cellular, tissue, and organ levels. The aim of this review is to provide biomedical engineers with an overview of the principles of epigenetics, methods of study, recent findings in epigenetic regulation in health and disease, and computational and sequencing tools for epigenetics analysis, with an emphasis on the cardiovascular system. This review concludes with the perspectives of the application of bioengineering to advance epigenetics and the utilization of epigenetics to translate bioengineering research into clinical medicine.

Entities:  

Keywords:  DNA methylation; chromatin remodeling; gene regulation; histone modification; long noncoding RNA; systems biology

Mesh:

Substances:

Year:  2017        PMID: 28301736     DOI: 10.1146/annurev-bioeng-071516-044720

Source DB:  PubMed          Journal:  Annu Rev Biomed Eng        ISSN: 1523-9829            Impact factor:   9.590


  48 in total

1.  A Conformational Switch in the Zinc Finger Protein Kaiso Mediates Differential Readout of Specific and Methylated DNA Sequences.

Authors:  Evgenia N Nikolova; Robyn L Stanfield; H Jane Dyson; Peter E Wright
Journal:  Biochemistry       Date:  2020-05-12       Impact factor: 3.162

Review 2.  Genetic and epigenetic regulation of human aging and longevity.

Authors:  Brian J Morris; Bradley J Willcox; Timothy A Donlon
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2018-09-01       Impact factor: 5.187

Review 3.  Epigenetic mechanisms of drug resistance in fungi.

Authors:  Zanetta Chang; Vikas Yadav; Soo Chan Lee; Joseph Heitman
Journal:  Fungal Genet Biol       Date:  2019-07-17       Impact factor: 3.495

Review 4.  Novel genetic and epigenetic factors of importance for inter-individual differences in drug disposition, response and toxicity.

Authors:  Volker M Lauschke; Yitian Zhou; Magnus Ingelman-Sundberg
Journal:  Pharmacol Ther       Date:  2019-01-22       Impact factor: 12.310

5.  Atheroprone flow enhances the endothelial-to-mesenchymal transition.

Authors:  Baochang Lai; Zhao Li; Ming He; Yili Wang; Lili Chen; Jiao Zhang; Yan Yang; John Y-J Shyy
Journal:  Am J Physiol Heart Circ Physiol       Date:  2018-07-27       Impact factor: 4.733

Review 6.  Uncovering epigenetic landscape: a new path for biomarkers identification and drug development.

Authors:  Daiane Teixeira de Oliveira; Renata Guerra-Sá
Journal:  Mol Biol Rep       Date:  2020-10-21       Impact factor: 2.316

7.  Chromatin Immunoprecipitation of Low Number of FACS-Purified Epidermal Cells.

Authors:  Carmit Bar; V Julian Valdes; Elena Ezhkova
Journal:  Methods Mol Biol       Date:  2020

Review 8.  Metabolic choreography of gene expression: nutrient transactions with the epigenome.

Authors:  Babukrishna Maniyadath; U S Sandra; Ullas Kolthur-Seetharam
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

Review 9.  Molecular networks in Network Medicine: Development and applications.

Authors:  Edwin K Silverman; Harald H H W Schmidt; Eleni Anastasiadou; Lucia Altucci; Marco Angelini; Lina Badimon; Jean-Luc Balligand; Giuditta Benincasa; Giovambattista Capasso; Federica Conte; Antonella Di Costanzo; Lorenzo Farina; Giulia Fiscon; Laurent Gatto; Michele Gentili; Joseph Loscalzo; Cinzia Marchese; Claudio Napoli; Paola Paci; Manuela Petti; John Quackenbush; Paolo Tieri; Davide Viggiano; Gemma Vilahur; Kimberly Glass; Jan Baumbach
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2020-04-19

10.  The active role of spermatozoa in transgenerational inheritance.

Authors:  Ilaria Sciamanna; Annalucia Serafino; James A Shapiro; Corrado Spadafora
Journal:  Proc Biol Sci       Date:  2019-08-28       Impact factor: 5.349

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