Literature DB >> 28301288

Transcription elongation.

Arkady Mustaev1, Jeffrey Roberts2, Max Gottesman3.   

Abstract

This review is focused on recent progress in understanding how Escherichia coli RNAP polymerase translocates along the DNA template and the factors that affect this movement. We discuss the fundamental aspects of RNAP translocation, template signals that influence forward or backward movement, and host or phage factors that modulate translocation.

Entities:  

Keywords:  Gre A/B; RNAP backtracking; bacteriophage transcription factors; transcription elongation; transcription-coupled repair

Mesh：

Substances：

Year:  2017        PMID： 28301288      PMCID： PMC5501382          DOI： 10.1080/21541264.2017.1289294

Source DB:  PubMed          Journal:  Transcription        ISSN： 2154-1272


  80 in total

Review 1.  Antitermination by bacteriophage lambda Q protein.

Authors:  J W Roberts; W Yarnell; E Bartlett; J Guo; M Marr; D C Ko; H Sun; C W Roberts
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1998

2.  Binding of transcription termination protein nun to nascent RNA and template DNA.

Authors:  R S Watnick; M E Gottesman
Journal:  Science       Date:  1999-12-17       Impact factor: 47.728

3.  A structural model of transcription elongation.

Authors:  N Korzheva; A Mustaev; M Kozlov; A Malhotra; V Nikiforov; A Goldfarb; S A Darst
Journal:  Science       Date:  2000-07-28       Impact factor: 47.728

4.  Transcription against an applied force.

Authors:  H Yin; M D Wang; K Svoboda; R Landick; S M Block; J Gelles
Journal:  Science       Date:  1995-12-08       Impact factor: 47.728

5.  UvrD facilitates DNA repair by pulling RNA polymerase backwards.

Authors:  Vitaly Epshtein; Venu Kamarthapu; Katelyn McGary; Vladimir Svetlov; Beatrix Ueberheide; Sergey Proshkin; Alexander Mironov; Evgeny Nudler
Journal:  Nature       Date:  2014-01-08       Impact factor: 49.962

6.  Reconstruction of bacterial transcription-coupled repair at single-molecule resolution.

Authors:  Jun Fan; Mathieu Leroux-Coyau; Nigel J Savery; Terence R Strick
Journal:  Nature       Date:  2016-08-03       Impact factor: 49.962

7.  Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase.

Authors:  Vasily Sosunov; Ekaterina Sosunova; Arkady Mustaev; Irina Bass; Vadim Nikiforov; Alex Goldfarb
Journal:  EMBO J       Date:  2003-05-01       Impact factor: 11.598

8.  Escherichia coli mutations that block transcription termination by phage HK022 Nun protein.

Authors:  R Robledo; B L Atkinson; M E Gottesman
Journal:  J Mol Biol       Date:  1991-08-05       Impact factor: 5.469

9.  Suppression of factor-dependent transcription termination by antiterminator RNA.

Authors:  Rodney A King; Robert A Weisberg
Journal:  J Bacteriol       Date:  2003-12       Impact factor: 3.490

Review 10.  Regulation of transcription elongation and termination.

Authors:  Robert S Washburn; Max E Gottesman
Journal:  Biomolecules       Date:  2015-05-29
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  7 in total

1.  Efficiency of the synthetic self-splicing RiboJ ribozyme is robust to cis- and trans-changes in genetic background.

Authors:  Markéta Vlková; Bhargava Reddy Morampalli; Olin K Silander
Journal:  Microbiologyopen       Date:  2021-08       Impact factor: 3.139

Review 2.  Structural advances in transcription elongation.

Authors:  Abdallah A Mohamed; Roberto Vazquez Nunez; Seychelle M Vos
Journal:  Curr Opin Struct Biol       Date:  2022-07-09       Impact factor: 7.786

3.  The transcription-repair coupling factor Mfd associates with RNA polymerase in the absence of exogenous damage.

Authors:  Han N Ho; Antoine M van Oijen; Harshad Ghodke
Journal:  Nat Commun       Date:  2018-04-20       Impact factor: 14.919

Review 4.  DNA supercoiling and transcription in bacteria: a two-way street.

Authors:  Charles J Dorman
Journal:  BMC Mol Cell Biol       Date:  2019-07-18

5.  Effects of DNA Topology on Transcription from rRNA Promoters in Bacillus subtilis.

Authors:  Petra Sudzinová; Milada Kambová; Olga Ramaniuk; Martin Benda; Hana Šanderová; Libor Krásný
Journal:  Microorganisms       Date:  2021-01-01

6.  Autoregulation of greA Expression Relies on GraL Rather than on greA Promoter Region.

Authors:  Maciej Dylewski; Llorenç Fernández-Coll; Bożena Bruhn-Olszewska; Carlos Balsalobre; Katarzyna Potrykus
Journal:  Int J Mol Sci       Date:  2019-10-22       Impact factor: 5.923

Review 7.  RNA polymerase pausing, stalling and bypass during transcription of damaged DNA: from molecular basis to functional consequences.

Authors:  Aleksei Agapov; Anna Olina; Andrey Kulbachinskiy
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971
  7 in total

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