Literature DB >> 35816930

Structural advances in transcription elongation.

Abdallah A Mohamed1, Roberto Vazquez Nunez2, Seychelle M Vos3.   

Abstract

Transcription is the first step of gene expression and involves RNA polymerases. After transcription initiation, RNA polymerase enters elongation followed by transcription termination at the end of the gene. Only recently, structures of transcription elongation complexes bound to key transcription elongation factors have been determined in bacterial and eukaryotic systems. These structures have revealed numerous insights including the basis for transcriptional pausing, RNA polymerase interaction with large complexes such as the ribosome and the spliceosome, and the transition into productive elongation. Here, we review these structures and describe areas for future research.
Copyright © 2022 Elsevier Ltd. All rights reserved.

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Year:  2022        PMID: 35816930      PMCID: PMC9398977          DOI: 10.1016/j.sbi.2022.102422

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   7.786


  99 in total

1.  Bacterial RNA polymerase can retain σ70 throughout transcription.

Authors:  Timothy T Harden; Christopher D Wells; Larry J Friedman; Robert Landick; Ann Hochschild; Jane Kondev; Jeff Gelles
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-05       Impact factor: 11.205

2.  Structure of a transcribing RNA polymerase II-U1 snRNP complex.

Authors:  Suyang Zhang; Shintaro Aibara; Seychelle M Vos; Dmitry E Agafonov; Reinhard Lührmann; Patrick Cramer
Journal:  Science       Date:  2021-01-15       Impact factor: 47.728

3.  TT-seq maps the human transient transcriptome.

Authors:  Björn Schwalb; Margaux Michel; Benedikt Zacher; Katja Frühauf; Carina Demel; Achim Tresch; Julien Gagneur; Patrick Cramer
Journal:  Science       Date:  2016-06-03       Impact factor: 47.728

4.  Stepwise Promoter Melting by Bacterial RNA Polymerase.

Authors:  James Chen; Courtney Chiu; Saumya Gopalkrishnan; Albert Y Chen; Paul Dominic B Olinares; Ruth M Saecker; Jared T Winkelman; Michael F Maloney; Brian T Chait; Wilma Ross; Richard L Gourse; Elizabeth A Campbell; Seth A Darst
Journal:  Mol Cell       Date:  2020-03-10       Impact factor: 17.970

5.  RNA Polymerase Accommodates a Pause RNA Hairpin by Global Conformational Rearrangements that Prolong Pausing.

Authors:  Jin Young Kang; Tatiana V Mishanina; Michael J Bellecourt; Rachel Anne Mooney; Seth A Darst; Robert Landick
Journal:  Mol Cell       Date:  2018-03-01       Impact factor: 17.970

6.  A histone octamer can step around a transcribing polymerase without leaving the template.

Authors:  V M Studitsky; D J Clark; G Felsenfeld
Journal:  Cell       Date:  1994-01-28       Impact factor: 41.582

7.  Structural basis of Integrator-mediated transcription regulation.

Authors:  Isaac Fianu; Ying Chen; Christian Dienemann; Olexandr Dybkov; Andreas Linden; Henning Urlaub; Patrick Cramer
Journal:  Science       Date:  2021-11-11       Impact factor: 47.728

8.  Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex.

Authors:  Ursula Schulze-Gahmen; Ignacia Echeverria; Goran Stjepanovic; Yun Bai; Huasong Lu; Dina Schneidman-Duhovny; Jennifer A Doudna; Qiang Zhou; Andrej Sali; James H Hurley
Journal:  Elife       Date:  2016-10-12       Impact factor: 8.140

9.  Prespliceosome structure provides insights into spliceosome assembly and regulation.

Authors:  Clemens Plaschka; Pei-Chun Lin; Clément Charenton; Kiyoshi Nagai
Journal:  Nature       Date:  2018-07-11       Impact factor: 49.962

10.  Spt5 histone binding activity preserves chromatin during transcription by RNA polymerase II.

Authors:  Cecile Evrin; Albert Serra-Cardona; Shoufu Duan; Progya P Mukherjee; Zhiguo Zhang; Karim P M Labib
Journal:  EMBO J       Date:  2022-02-01       Impact factor: 14.012

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