Literature DB >> 2830026

The terminus of SV40 DNA replication and transcription contains a sharp sequence-directed curve.

C H Hsieh1, J D Griffith.   

Abstract

We have examined nucleosome positioning on two DNA segments containing sharp sequence-directed curvatures. A 223 bp DNA from Crithidia fasciculata was cloned into two sites in pBR325 separated by 28%. These sites were found to selectively reconstitute nucleosomes 5- to 7-fold more effectively than the adjoining straight DNA. The terminus of replication and termini of transcription of SV40 DNA are contained within a region of approximately 200 bp centrally located in a 1216 bp fragment. Visualization of this fragment by electron microscopy revealed a sharp curve of approximately 200 degrees in the terminal region. Reconstitution of histone protein with this fragment revealed a 2- to 5-fold higher probability of assembling nucleosomes in the terminal region over the adjacent DNA.

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Year:  1988        PMID: 2830026     DOI: 10.1016/0092-8674(88)90466-7

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  32 in total

1.  The global intrinsic curvature of archaeal and eubacterial genomes is mostly contained in their dinucleotide composition and is probably not an adaptation.

Authors:  E Merino; A Garciarrubio
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  A non-curved chicken lysozyme 5' matrix attachment site is 3' followed by a strongly curved DNA sequence.

Authors:  J P von Kries; L Phi-Van; S Diekmann; W H Strätling
Journal:  Nucleic Acids Res       Date:  1990-07-11       Impact factor: 16.971

3.  The [(G/C)3NN]n motif: a common DNA repeat that excludes nucleosomes.

Authors:  Y H Wang; J D Griffith
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-20       Impact factor: 11.205

4.  Transcriptional interference perturbs the binding of Sp1 to the HIV-1 promoter.

Authors:  I H Greger; F Demarchi; M Giacca; N J Proudfoot
Journal:  Nucleic Acids Res       Date:  1998-03-01       Impact factor: 16.971

5.  Chromatin structure and factor site occupancies in an in vivo-assembled transcription elongation complex.

Authors:  J K Eadara; K G Hadlock; L C Lutter
Journal:  Nucleic Acids Res       Date:  1996-10-15       Impact factor: 16.971

6.  Sequences that promote formation of catenated intertwines during termination of DNA replication.

Authors:  S C Fields-Berry; M L DePamphilis
Journal:  Nucleic Acids Res       Date:  1989-04-25       Impact factor: 16.971

7.  Mapping in vivo topoisomerase I sites on simian virus 40 DNA: asymmetric distribution of sites on replicating molecules.

Authors:  S E Porter; J J Champoux
Journal:  Mol Cell Biol       Date:  1989-02       Impact factor: 4.272

8.  Random cloning of bent DNA segments from Saccharomyces cerevisiae and primary characterization of their structures.

Authors:  T Mizuno; K Itoh
Journal:  Mol Gen Genet       Date:  1988-10

9.  Transcription factor access is mediated by accurately positioned nucleosomes on the mouse mammary tumor virus promoter.

Authors:  T K Archer; M G Cordingley; R G Wolford; G L Hager
Journal:  Mol Cell Biol       Date:  1991-02       Impact factor: 4.272

10.  Oligonucleotide sequence motifs as nucleosome positioning signals.

Authors:  Clayton K Collings; Alfonso G Fernandez; Chad G Pitschka; Troy B Hawkins; John N Anderson
Journal:  PLoS One       Date:  2010-06-03       Impact factor: 3.240

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