Literature DB >> 28292890

Coarse graining from variationally enhanced sampling applied to the Ginzburg-Landau model.

Michele Invernizzi1,2, Omar Valsson2,3, Michele Parrinello4,3.   

Abstract

A powerful way to deal with a complex system is to build a coarse-grained model capable of catching its main physical features, while being computationally affordable. Inevitably, such coarse-grained models introduce a set of phenomenological parameters, which are often not easily deducible from the underlying atomistic system. We present a unique approach to the calculation of these parameters, based on the recently introduced variationally enhanced sampling method. It allows us to obtain the parameters from atomistic simulations, providing thus a direct connection between the microscopic and the mesoscopic scale. The coarse-grained model we consider is that of Ginzburg-Landau, valid around a second-order critical point. In particular, we use it to describe a Lennard-Jones fluid in the region close to the liquid-vapor critical point. The procedure is general and can be adapted to other coarse-grained models.

Entities:  

Keywords:  Ginzburg–Landau free energy; Lennard–Jones; coarse graining; enhanced sampling; second-order phase transitions

Year:  2017        PMID: 28292890      PMCID: PMC5380034          DOI: 10.1073/pnas.1618455114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Escaping free-energy minima.

Authors:  Alessandro Laio; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

2.  Variationally Optimized Free-Energy Flooding for Rate Calculation.

Authors:  James McCarty; Omar Valsson; Pratyush Tiwary; Michele Parrinello
Journal:  Phys Rev Lett       Date:  2015-08-10       Impact factor: 9.161

3.  Well-Tempered Variational Approach to Enhanced Sampling.

Authors:  Omar Valsson; Michele Parrinello
Journal:  J Chem Theory Comput       Date:  2015-05-04       Impact factor: 6.006

4.  Canonical sampling through velocity rescaling.

Authors:  Giovanni Bussi; Davide Donadio; Michele Parrinello
Journal:  J Chem Phys       Date:  2007-01-07       Impact factor: 3.488

5.  Critical point estimation of the Lennard-Jones pure fluid and binary mixtures.

Authors:  Javier Pérez-Pellitero; Philippe Ungerer; Gerassimos Orkoulas; Allan D Mackie
Journal:  J Chem Phys       Date:  2006-08-07       Impact factor: 3.488

6.  The relative entropy is fundamental to multiscale and inverse thermodynamic problems.

Authors:  M Scott Shell
Journal:  J Chem Phys       Date:  2008-10-14       Impact factor: 3.488

7.  Critical-point and coexistence-curve properties of the Lennard-Jones fluid: A finite-size scaling study.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1995-07

8.  Coarse-graining errors and numerical optimization using a relative entropy framework.

Authors:  Aviel Chaimovich; M Scott Shell
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

9.  Enhancing Important Fluctuations: Rare Events and Metadynamics from a Conceptual Viewpoint.

Authors:  Omar Valsson; Pratyush Tiwary; Michele Parrinello
Journal:  Annu Rev Phys Chem       Date:  2016-03-10       Impact factor: 12.703

10.  The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models.

Authors:  W G Noid; Jhih-Wei Chu; Gary S Ayton; Vinod Krishna; Sergei Izvekov; Gregory A Voth; Avisek Das; Hans C Andersen
Journal:  J Chem Phys       Date:  2008-06-28       Impact factor: 3.488

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  2 in total

1.  Neural networks-based variationally enhanced sampling.

Authors:  Luigi Bonati; Yue-Yu Zhang; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-15       Impact factor: 11.205

2.  Improving the Efficiency of Variationally Enhanced Sampling with Wavelet-Based Bias Potentials.

Authors:  Benjamin Pampel; Omar Valsson
Journal:  J Chem Theory Comput       Date:  2022-06-28       Impact factor: 6.578

  2 in total

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