| Literature DB >> 28289589 |
J Krsteski1, S Jurgec2, M Pakiž3, I But3, U Potočnik4.
Abstract
Uterine leiomyomas (ULM) are a common cause of solid pelvic tumors in women. Their etiopathogenesis remains unclear. Interleukins (ILs) and their receptors can influence tumor biology of ULM. The aim of this study was to evaluate single nucleotide polymorphisms (SNPs) exhibited in the genes IL4 (rs2070874), IL4R (rs1801275), IL12RB1 (rs11575934), IL12B (rs6887695), IL13 (rs20541) and IL23R (rs7517847) as risk factors for ULM in Slovenian women and to identify associations between corresponding clinical parameters and the analyzed SNPs. In addition, solitary and multiple ULM were compared to identify clinical and/or genetic parameters influencing their occurrence. We conducted a case-control study that included 181 women with leiomyomas and 133 control subjects. Genotyping of selected SNPs was performed using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and high resolution melting (HRM) techniques. The TT genotype of rs20541 (IL13) was significantly associated with decreased risk of ULM compared to both the CC and CT genotypes [p = 0.018; odds ratio (OR) = 0.184; 95% confidence interval (95% CI) = 0.048-0.7121. Using genetic and clinical data to develop a predictive model with logistic regression, we found that adenomyosis, higher age at diagnosis, family history of ULM occurrence, earlier menarche, lower number of pregnancies and lower age at first sexual intercourse, the G allele and genotypes AG and GG of rs1801275 (IL4R) were associated with an increased risk of multiple ULM occurrence. We also found an association between rs20541 (IL13) and 17ß-estradiol serum levels in patients with multiple ULM (p 0.003). Our study showed, for the first time, that rs20541 (IL13) may contribute to susceptibility of ULM development and that rs1801275 (IL4R) can predispose patients to develop multiple ULM.Entities:
Keywords: Genetic risk; IL13 gene; Single nucleotide polymorphism (SNP); Uterine leiomyomas (ULM)
Year: 2017 PMID: 28289589 PMCID: PMC5343331 DOI: 10.1515/bjmg-2016-0036
Source DB: PubMed Journal: Balkan J Med Genet ISSN: 1311-0160 Impact factor: 0.519
Primer sequences, primer concentrations, annealing temperatures and size of polymerase chain reaction product; restriction enzyme, enzyme concentration and size of DNA fragments after restriction for IL12B (rs6887695). IL12RB1 (rs11575934), 1L23R (rs7517847), 1L4 (rs2070874) and 1L4R (rs1801275).
| SNP ID (gene) | Primer Sequence (5’-3’) | Final Concentration of Primer (nM) | Ta (°C) | PCR Product Size (bp) | Restriction Enzyme | Enzyme Concentration (units) | Allele | DNA Fragment Size After Restriction (bp) |
|---|---|---|---|---|---|---|---|---|
| rs6887695 | F-TTTCAGCGTGAGACCATTCA | 250 | 55 | 245 | 0.5 | C | 207+38 | |
| rs11575934 | F-GGACAATTCTTACGGCCTGA | 250 | 55 | 203 | 0.5 | A | 104+99 | |
| rs7517847 | F-TCTGCCAATTCCCTAAAC | 375 | 52 | 259 | 0.25 | G | 259 | |
| rs2070874 | F-TAGAGATATCTTTGTCAGCATT | 250 | 52 | 188 | 0.1 | C | 64+30 | |
| rs1801275 | F-TCTCGGCCCCCACCAGTGGCGATC | 125 | 60 | 418 | 0.2 | A | 209 |
SNP ID: single nucleotide polymorphism identity; Ta: annealing temperature; PCR: polymerase chain reaction; bp: base pair; F: forward; R: reverse.
Figure 1Primer sequences, primer concentrations, annealing temperatures and size of polymerase chain reaction product; restriction enzyme, enzyme concentration and size of DNA fragments after restriction for IL12B (rs6887695), IL12RB1 (rs11575934), IL23R (rs7517847), IL4 (rs2070874) and IL4R (rs1801275).
Association analysis for IL13 (rs20541) in women with uterine leiomyomas and controls.
| SNPID | Genotype | ULM | Norma] Population | Healthy Controls | All Controls | Statistical Analyses | ULM | ULM | ULM | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CC | TT | CC | TT | CC | TT | |||||||
| rs20451 | CC | 101(58.0) | 48 (52.2) | 23 (52.2) | 71 (53.4) | 0.42 | 0.588 | 0.862 | 0.574 | 0.367 | ||
SNP ID: single nucleotide polymorphism identity; ULM: uterine leiomyomas; OR: odds ratio; 95% CI: 95% confidence interval.
Association analysis for IL13 (rs20541) in women with multiple uterine leiomyomas and controls.
| SNP ID | Genotype | Solitary | Multiple | Healthy | All Controls | Statistical | Multiple ULM | Multiple ULM | Multiple ULM vs. | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CC | TT | CC | TT | CC | TT | |||||||
| rs20451 | CC | 42(53.8) | 59(61.5) | 34 (52.2) | 71 (53.4) | 0.280 | 0.573 | 0.511 | 0.573 | |||
SNP ID: single nucleotide polymorphism identity; ULM: uterine leiomyomas; OR: odds ratio; 95% CI: 95% confidence interval.
Logistic regression for the prediction of uterine leiomyomas subgroups. [Dependent variable: ULM subtype (multiple vs. solitary).]
| Independent Variables | Exp (B) | 95% CI for Exp (B) | Coefficient | Nag. R2 | Accuracy (%) | |
|---|---|---|---|---|---|---|
| rs1801275 ( | 3.641 | 1.206 | 10.996 | 2.19 × 10-2 | ||
| Adenomyosis (present | 7.967 | 2.668 | 23.790 | 2.01 × 10-4 | ||
| Age at diagnosis (years) | 1.093 | 1.036 | 1.153 | 1.17 × 10-3 | ||
| Family predisposition (negative | 0.200 | 0.087 | 0.462 | 1.62 × 104 | ||
| Menarche (year) | 0.445 | 0.323 | 0.613 | 7.41 × 10-7 | 0.485 | 75.0 |
| Number of pregnancies | 0.562 | 0.405 | 0.781 | 5.84 × 10-4 | ||
| Age at first sexual intercourse (year) | 0.674 | 0.533 | 0.852 | 9.59×10-4 | ||
| Constant | 7831870 | 1.40×10-6 | ||||
| rs1801275 ( | 6.975 | 1.680 | 28.958 | 7.49 × 10-3 | ||
| Adenomyosis (present | 11.315 | 2.118 | 60.454 | 4.55 × 10-3 | ||
| Age at diagnosis (years) | 1.086 | 1.007 | 1.171 | 3.24 × 10-2 | ||
| Family predisposition (negative | 0.152 | 0.044 | 0.528 | 3.03 × 10-3 | ||
| Menarche (year) | 0.401 | 0.247 | 0.650 | 2.10×10-4 | 0.535 | 76.6 |
| Number of pregnancies | 0.559 | 0.343 | 0.912 | 1.99 × 10-2 | ||
| Age at first sexual intercourse (year) | 0.655 | 0.462 | 0.930 | 1.81 × 10-2 | ||
| Constant | 55741666 | 3.98×10-4 | ||||
Exp (B): odds ratio, as given by logistic regression in SPSS; 95% CI: 95% confidence interval.