Literature DB >> 28287718

Regulating miRNA-21 Biogenesis By Bifunctional Small Molecules.

Hao Yan1, Umesh Bhattarai1, Zhi-Fo Guo1, Fu-Sen Liang1.   

Abstract

We report a new strategy to regulate microRNAs (miRNAs) biogenesis by using bifunctional small molecules that consist of a pre-miRNA binding unit connected by a linker to a Dicer inhibiting unit. In this effort, fluorescence polarization-based screening was used to identify neomycin as a pre-miR-21 binding ligand. Although neomycin cannot inhibit miR-21 maturation, linking it to the RNase inhibitor 1 forms the bifunctional conjugate 7A, which inhibits the production of miR-21. We expect that this strategy will be applicable to design other molecules for miRNA regulation.

Entities:  

Year:  2017        PMID: 28287718      PMCID: PMC5620130          DOI: 10.1021/jacs.7b00610

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  28 in total

1.  Design of Small Molecules That Recognize RNA: Development of Aminoglycosides as Potential Antitumor Agents That Target Oncogenic RNA Sequences This work was supported by the NIH. We thank Professor Peter Voght for his suggestion of the oncogenic RNA sequences as targets.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-03       Impact factor: 15.336

Review 2.  Targeting RNA with small molecules.

Authors:  Yitzhak Tor
Journal:  Chembiochem       Date:  2003-10-06       Impact factor: 3.164

3.  Molecular recognition of RNA by neomycin and a restricted neomycin derivative.

Authors:  Fang Zhao; Qiang Zhao; Kenneth F Blount; Qing Han; Yitzhak Tor; Thomas Hermann
Journal:  Angew Chem Int Ed Engl       Date:  2005-08-19       Impact factor: 15.336

4.  Small-molecule inhibitors of microrna miR-21 function.

Authors:  Kiranmai Gumireddy; Douglas D Young; Xin Xiong; John B Hogenesch; Qihong Huang; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

5.  Structural basis for double-stranded RNA processing by Dicer.

Authors:  Ian J Macrae; Kaihong Zhou; Fei Li; Adrian Repic; Angela N Brooks; W Zacheus Cande; Paul D Adams; Jennifer A Doudna
Journal:  Science       Date:  2006-01-13       Impact factor: 47.728

Review 6.  Targeting RNA with small molecules.

Authors:  Jason R Thomas; Paul J Hergenrother
Journal:  Chem Rev       Date:  2008-03-25       Impact factor: 60.622

7.  Enhanced RNA binding of dimerized aminoglycosides.

Authors:  K Michael; H Wang; Y Tor
Journal:  Bioorg Med Chem       Date:  1999-07       Impact factor: 3.641

8.  Use of a pharmacophore model to discover a new class of influenza endonuclease inhibitors.

Authors:  Kevin E B Parkes; Philipp Ermert; Jürg Fässler; Jane Ives; Joseph A Martin; John H Merrett; Daniel Obrecht; Glyn Williams; Klaus Klumpp
Journal:  J Med Chem       Date:  2003-03-27       Impact factor: 7.446

9.  Design, synthesis, and biological evaluation of a series of 2-hydroxyisoquinoline-1,3(2H,4H)-diones as dual inhibitors of human immunodeficiency virus type 1 integrase and the reverse transcriptase RNase H domain.

Authors:  Muriel Billamboz; Fabrice Bailly; Maria Letizia Barreca; Laura De Luca; Jean-François Mouscadet; Christina Calmels; Marie-Line Andréola; Myriam Witvrouw; Frauke Christ; Zeger Debyser; Philippe Cotelle
Journal:  J Med Chem       Date:  2008-12-25       Impact factor: 7.446

10.  MicroRNA-21 (miR-21) post-transcriptionally downregulates tumor suppressor Pdcd4 and stimulates invasion, intravasation and metastasis in colorectal cancer.

Authors:  I A Asangani; S A K Rasheed; D A Nikolova; J H Leupold; N H Colburn; S Post; H Allgayer
Journal:  Oncogene       Date:  2007-10-29       Impact factor: 9.867

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  13 in total

Review 1.  Small molecules with big roles in microRNA chemical biology and microRNA-targeted therapeutics.

Authors:  Rengen Fan; Chaocheng Xiao; Xinqiang Wan; Wenzhang Cha; Yufeng Miao; Yong Zhou; Chenglin Qin; Ting Cui; Fenglian Su; Xiangxiang Shan
Journal:  RNA Biol       Date:  2019-04-03       Impact factor: 4.652

Review 2.  Drugging the "undruggable" microRNAs.

Authors:  Dejun Liu; Xinqiang Wan; Xiangxiang Shan; Rengen Fan; Wenzhang Zha
Journal:  Cell Mol Life Sci       Date:  2020-10-14       Impact factor: 9.261

3.  Amperometric detection of microRNA based on DNA-controlled current of a molybdophosphate redox probe and amplification via hybridization chain reaction.

Authors:  Kejun Feng; Jin Liu; Lei Deng; Hongjian Yu; Minghui Yang
Journal:  Mikrochim Acta       Date:  2017-12-06       Impact factor: 5.833

4.  miRNA inhibition by proximity-enabled Dicer inactivation.

Authors:  Hao Yan; Fu-Sen Liang
Journal:  Methods       Date:  2019-05-09       Impact factor: 3.608

5.  Tetracyclines as Inhibitors of Pre-microRNA Maturation: A Disconnection between RNA Binding and Inhibition.

Authors:  Amanda L Garner; Daniel A Lorenz; Jorge Sandoval; Erin E Gallagher; Samuel A Kerk; Tanpreet Kaur; Arya Menon
Journal:  ACS Med Chem Lett       Date:  2019-04-22       Impact factor: 4.345

6.  Quantification of MicroRNAs by Coupling Cyclic Enzymatic Amplification with Microfluidic Voltage-Assisted Liquid Desorption Electrospray Ionization Mass Spectrometry.

Authors:  Xiangtang Li; Pratik Rout; Rui Xu; Li Pan; Paul B Tchounwou; Yonggang Ma; Yi-Ming Liu
Journal:  Anal Chem       Date:  2018-11-06       Impact factor: 6.986

7.  Precise Small Molecule Degradation of a Noncoding RNA Identifies Cellular Binding Sites and Modulates an Oncogenic Phenotype.

Authors:  Yue Li; Matthew D Disney
Journal:  ACS Chem Biol       Date:  2018-10-30       Impact factor: 5.100

8.  Design, synthesis and activity of light deactivatable microRNA inhibitor.

Authors:  Hao Yan; Umesh Bhattarai; Yabin Song; Fu-Sen Liang
Journal:  Bioorg Chem       Date:  2018-07-02       Impact factor: 5.275

9.  Constrained peptides mimic a viral suppressor of RNA silencing.

Authors:  Arne Kuepper; Niall M McLoughlin; Saskia Neubacher; Alejandro Yeste-Vázquez; Estel Collado Camps; Chandran Nithin; Sunandan Mukherjee; Lucas Bethge; Janusz M Bujnicki; Roland Brock; Stefan Heinrichs; Tom N Grossmann
Journal:  Nucleic Acids Res       Date:  2021-12-16       Impact factor: 16.971

10.  Reprogramming of Protein-Targeted Small-Molecule Medicines to RNA by Ribonuclease Recruitment.

Authors:  Peiyuan Zhang; Xiaohui Liu; Daniel Abegg; Toru Tanaka; Yuquan Tong; Raphael I Benhamou; Jared Baisden; Gogce Crynen; Samantha M Meyer; Michael D Cameron; Arnab K Chatterjee; Alexander Adibekian; Jessica L Childs-Disney; Matthew D Disney
Journal:  J Am Chem Soc       Date:  2021-08-13       Impact factor: 16.383

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