Literature DB >> 2828661

Variation of R1 repeated sequence present in open reading frame 11 of varicella-zoster virus strains.

H Kinoshita1, R Hondo, F Taguchi, Y Yogo.   

Abstract

We molecularly cloned the tandem direct reiteration (R1) present in open reading frame (ORF) 11 from three independent strains of varicella-zoster virus. Comparison of the R1 sequences among varicella-zoster virus strains revealed that, although the portion of R1 near the 5' terminus of ORF 11 was conserved among strains, the 3'-terminal portion varied remarkably. This variation was due to the different arrangement of two elements (A and B) and a segment produced by fusion of A and B and to a single-base change in the A element. Since the difference in the size of R1 among strains was a multiple of 3 base pairs, the variation in R1 caused no frame shift in ORF 11.

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Year:  1988        PMID： 2828661      PMCID： PMC253676          DOI： 10.1128/JVI.62.3.1097-1100.1988

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  19 in total

1.  Analysis by restriction enzyme cleavage of human varicella-zoster virus DNAs.

Authors:  J E Oakes; J P Iltis; R W Hyman; F Rapp
Journal:  Virology       Date:  1977-10-15       Impact factor: 3.616

2.  Characterization and nucleotide sequence of two herpes simplex virus 1 genes whose products modulate alpha-trans-inducing factor-dependent activation of alpha genes.

Authors:  J L McKnight; P E Pellett; F J Jenkins; B Roizman
Journal:  J Virol       Date:  1987-04       Impact factor: 5.103

3.  Varicella virus isolation from spinal ganglion.

Authors:  H Shibuta; T Ishikawa; R Hondo; Y Aoyama; K Kurata; M Matumoto
Journal:  Arch Gesamte Virusforsch       Date:  1974

4.  Classification and nomenclature of viruses. Fourth report of the International Committee on Taxonomy of Viruses.

Authors: 
Journal:  Intervirology       Date:  1982       Impact factor: 1.763

5.  Analysis of the DNAs from seven varicella-zoster virus isolates.

Authors:  J C Richards; R W Hyman; F Rapp
Journal:  J Virol       Date:  1979-12       Impact factor: 5.103

6.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

7.  Restriction endonuclease analysis of the DNA from varicella-zoster virus: stability of the DNA after passage in vitro.

Authors:  H J Zweerink; D H Morton; L W Stanton; B J Neff
Journal:  J Gen Virol       Date:  1981-07       Impact factor: 3.891

8.  Structure of varicella-zoster virus DNA.

Authors:  S E Straus; H S Aulakh; W T Ruyechan; J Hay; T A Casey; G F Vande Woude; J Owens; H A Smith
Journal:  J Virol       Date:  1981-11       Impact factor: 5.103

9.  Restriction endonuclease analysis of varicella-zoster vaccine virus and wild-type DNAs.

Authors:  J H Martin; D E Dohner; W J Wellinghoff; L D Gelb
Journal:  J Med Virol       Date:  1982       Impact factor: 2.327

10.  Genome differences among varicella-zoster virus isolates.

Authors:  S E Straus; J Hay; H Smith; J Owens
Journal:  J Gen Virol       Date:  1983-05       Impact factor: 3.891
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  8 in total

1.  Phylogenetic analysis of varicella-zoster virus: evidence of intercontinental spread of genotypes and recombination.

Authors:  Winsome Barrett Muir; Richard Nichols; Judith Breuer
Journal:  J Virol       Date:  2002-02       Impact factor: 5.103

2.  Variable R1 region in varicella zoster virus in fulminant type of acute retinal necrosis syndrome.

Authors:  T Abe; M Sato; M Tamai
Journal:  Br J Ophthalmol       Date:  2000-02       Impact factor: 4.638

3.  Studies on crystal structures, active-centre geometry and depurinating mechanism of two ribosome-inactivating proteins.

Authors:  Q Huang; S Liu; Y Tang; S Jin; Y Wang
Journal:  Biochem J       Date:  1995-07-01       Impact factor: 3.857

4.  Identification of varicella-zoster virus strains by PCR analysis of three repeat elements and a PstI-site-less region.

Authors:  M Takada; T Suzutani; I Yoshida; M Matoba; M Azuma
Journal:  J Clin Microbiol       Date:  1995-03       Impact factor: 5.948

5.  Global identification of three major genotypes of varicella-zoster virus: longitudinal clustering and strategies for genotyping.

Authors:  Vladimir N Loparev; Antonio Gonzalez; Marlene Deleon-Carnes; Graham Tipples; Helmut Fickenscher; Einar G Torfason; D Scott Schmid
Journal:  J Virol       Date:  2004-08       Impact factor: 5.103

6.  Complete DNA sequence analyses of the first two varicella-zoster virus glycoprotein E (D150N) mutant viruses found in North America: evolution of genotypes with an accelerated cell spread phenotype.

Authors:  Charles Grose; Shaun Tyler; Geoff Peters; Joanne Hiebert; Gwen M Stephens; William T Ruyechan; Wallen Jackson; Johnathan Storlie; Graham A Tipples
Journal:  J Virol       Date:  2004-07       Impact factor: 5.103

7.  Strain variation of R5 direct repeats in the right-hand portion of the long unique segment of varicella-zoster virus DNA.

Authors:  R Hondo; Y Yogo
Journal:  J Virol       Date:  1988-08       Impact factor: 5.103

Review 8.  Molecular Aspects of Varicella-Zoster Virus Latency.

Authors:  Daniel P Depledge; Tomohiko Sadaoka; Werner J D Ouwendijk
Journal:  Viruses       Date:  2018-06-28       Impact factor: 5.048
  8 in total

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