Literature DB >> 28282262

New insights for therapeutic recombinant human miRNAs heterologous production: Rhodovolum sulfidophilum vs Escherichia coli.

Patrícia Pereira1, Augusto Q Pedro1, João A Queiroz1, Ana R Figueiras2,3, Fani Sousa1.   

Abstract

RNA interference-based technologies have emerged as an attractive and effective therapeutic option with potential application in diverse human diseases. These tools rely on the development of efficient strategies to obtain homogeneous non-coding RNA samples with adequate integrity and purity, thus avoiding non-targeted gene-silencing and related side-effects that impair their application onto pre-clinical practice. These RNAs have been preferentially obtained by in vitro transcription using DNA templates or via chemical synthesis. As an alternative to overcome the limitations presented by these methods, in vivo recombinant production of RNA biomolecules has become the focus in RNA synthesis research. Therefore, using pre-miR-29b as a model, here it is evaluated the time-course profile of Escherichia coli and Rhodovolum sulfidophilum microfactories to produce this microRNA. As the presence of major host contaminants arising from the biosynthesis process may have important implications in the subsequent downstream processing, it is also evaluated the production of genomic DNA and host total proteins. Considering the rapidly growing interest on these innovative biopharmaceuticals, novel, more cost-effective, simple and easily scaled-up technologies are highly desirable. As microRNA recombinant expression fulfills those requirements, it may take the leading edge in the methodologies currently available to obtain microRNAs for clinical or structural studies.

Entities:  

Keywords:  Escherichia coli; RNAi technology; Rhodovolum sulfidophilum; fermentation; miRNA; non-coding RNA; recombinant RNA

Mesh:

Substances:

Year:  2017        PMID: 28282262      PMCID: PMC5639825          DOI: 10.1080/21655979.2017.1284710

Source DB:  PubMed          Journal:  Bioengineered        ISSN: 2165-5979            Impact factor:   3.269


  27 in total

1.  Synthesis of RNA by in vitro transcription.

Authors:  Bertrand Beckert; Benoît Masquida
Journal:  Methods Mol Biol       Date:  2011

Review 2.  Affinity approaches in RNAi-based therapeutics purification.

Authors:  Patrícia Pereira; João A Queiroz; Ana Figueiras; Fani Sousa
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2016-01-21       Impact factor: 3.205

3.  A generic protocol for the expression and purification of recombinant RNA in Escherichia coli using a tRNA scaffold.

Authors:  Luc Ponchon; Geneviève Beauvais; Sylvie Nonin-Lecomte; Frédéric Dardel
Journal:  Nat Protoc       Date:  2009-05-28       Impact factor: 13.491

4.  Extracellular production of an RNA aptamer by ribonuclease-free marine bacteria harboring engineered plasmids: a proposal for industrial RNA drug production.

Authors:  Hiromichi Suzuki; Tomoaki Ando; So Umekage; Terumichi Tanaka; Yo Kikuchi
Journal:  Appl Environ Microbiol       Date:  2009-12-04       Impact factor: 4.792

Review 5.  Large scale expression and purification of recombinant RNA in Escherichia coli.

Authors:  Luc Ponchon; Frédéric Dardel
Journal:  Methods       Date:  2011-02-12       Impact factor: 3.608

6.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

Review 7.  RNA interference--a silent but an efficient therapeutic tool.

Authors:  Puthucode Venkatakrishnan Ramachandran; Savarimuthu Ignacimuthu
Journal:  Appl Biochem Biotechnol       Date:  2013-01-23       Impact factor: 2.926

8.  Recognition of the pre-miRNA structure by Drosophila Dicer-1.

Authors:  Akihisa Tsutsumi; Tomoko Kawamata; Natsuko Izumi; Hervé Seitz; Yukihide Tomari
Journal:  Nat Struct Mol Biol       Date:  2011-09-18       Impact factor: 15.369

Review 9.  MicroRNAs (miRNAs) in neurodegenerative diseases.

Authors:  Peter T Nelson; Wang-Xia Wang; Bernard W Rajeev
Journal:  Brain Pathol       Date:  2008-01       Impact factor: 6.508

10.  Co-expression of RNA-protein complexes in Escherichia coli and applications to RNA biology.

Authors:  Luc Ponchon; Marjorie Catala; Bili Seijo; Marguerite El Khouri; Frédéric Dardel; Sylvie Nonin-Lecomte; Carine Tisné
Journal:  Nucleic Acids Res       Date:  2013-06-26       Impact factor: 16.971

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  7 in total

1.  Bioengineering of a single long noncoding RNA molecule that carries multiple small RNAs.

Authors:  Hannah Petrek; Neelu Batra; Pui Yan Ho; Mei-Juan Tu; Ai-Ming Yu
Journal:  Appl Microbiol Biotechnol       Date:  2019-06-11       Impact factor: 4.813

2.  Bioengineered Noncoding RNAs Selectively Change Cellular miRNome Profiles for Cancer Therapy.

Authors:  Pui Yan Ho; Zhijian Duan; Neelu Batra; Joseph L Jilek; Mei-Juan Tu; Jing-Xin Qiu; Zihua Hu; Theodore Wun; Primo N Lara; Ralph W DeVere White; Hong-Wu Chen; Ai-Ming Yu
Journal:  J Pharmacol Exp Ther       Date:  2018-03-30       Impact factor: 4.030

Review 3.  RNA therapy: Are we using the right molecules?

Authors:  Ai-Ming Yu; Chao Jian; Allan H Yu; Mei-Juan Tu
Journal:  Pharmacol Ther       Date:  2018-12-04       Impact factor: 12.310

4.  Cholinium-based Good's buffers ionic liquids as remarkable stabilizers and recyclable preservation media for recombinant small RNAs.

Authors:  Augusto Q Pedro; Patrícia Pereira; Maria J Quental; André P Carvalho; Sérgio M Santos; João A Queiroz; Fani Sousa; Mara G Freire
Journal:  ACS Sustain Chem Eng       Date:  2018-11-08       Impact factor: 8.198

Review 5.  Novel approaches for efficient  in vivo fermentation production of noncoding RNAs.

Authors:  Ai-Ming Yu; Neelu Batra; Mei-Juan Tu; Colleen Sweeney
Journal:  Appl Microbiol Biotechnol       Date:  2020-01-17       Impact factor: 4.813

Review 6.  A guide to large-scale RNA sample preparation.

Authors:  Lorenzo Baronti; Hampus Karlsson; Maja Marušič; Katja Petzold
Journal:  Anal Bioanal Chem       Date:  2018-03-15       Impact factor: 4.142

Review 7.  mRNA, a Revolution in Biomedicine.

Authors:  Bruno Baptista; Rita Carapito; Nabila Laroui; Chantal Pichon; Fani Sousa
Journal:  Pharmaceutics       Date:  2021-12-05       Impact factor: 6.321

  7 in total

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