Literature DB >> 28279935

Evaluation of the Illumina ForenSeq™ DNA Signature Prep Kit - MPS forensic application for the MiSeq FGx™ benchtop sequencer.

Catarina Xavier1, Walther Parson2.   

Abstract

Massively Parallel (Next Generation) Sequencing (MPS) technologies have recently been proven useful and successful in typing various markers relevant in forensic genetics, such as STRs, SNPs and mitochondrial genomes. Early studies investigated self-developed DNA libraries, commercially supplied kits are currently being made available to allow a smoother and gradual implementation of such technologies in forensic laboratories. The ForenSeq™ DNA Signature Prep Kit (Illumina, CA) is the first commercially available STR kit that can be used on the MiSeq FGx™ (Illumina, CA) benchtop high-throughput sequencer. This kit allows the simultaneous typing of 59 STRs and up to 172 SNPs in a single reaction and presents a short library preparation protocol adapted to contemporary forensic requirements. In this study, we evaluated the beta version of the ForenSeq DNA Signature Prep Kit MiSeq FGx system by investigating reproducibility, sensitivity, mixtures, concordance, casework-type and aDNA samples and found it to perform successfully, proving to be a robust method for future forensic applications. MPS brings the possibility of complex multiplexing, high sensitivity and sequencing resolution to forensics; however, the need for consensual directions on databasing, data storage and nomenclature must be taken into consideration.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Ancient DNA; Forensic science; Massiv parallel sequencing; Short tandem repeats; Single nucleotide polymorphisms

Mesh:

Year:  2017        PMID: 28279935     DOI: 10.1016/j.fsigen.2017.02.018

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  15 in total

1.  Forensic Feature Exploration and Comprehensive Genetic Insights Into Yugu Ethnic Minority and Northern Han Population via a Novel NGS-Based Marker Set.

Authors:  Qiong Lan; Congying Zhao; Chong Chen; Hui Xu; Yating Fang; Hongbing Yao; Bofeng Zhu
Journal:  Front Genet       Date:  2022-04-27       Impact factor: 4.772

2.  Development and validation of a novel 133-plex forensic STR panel (52 STRs and 81 Y-STRs) using single-end 400 bp massive parallel sequencing.

Authors:  Haoliang Fan; Lingxiang Wang; Changhui Liu; Xiaoyu Lu; Xuding Xu; Kai Ru; Pingming Qiu; Chao Liu; Shao-Qing Wen
Journal:  Int J Legal Med       Date:  2021-11-06       Impact factor: 2.791

3.  Massively parallel sequencing analysis of nondegraded and degraded DNA mixtures using the ForenSeq™ system in combination with EuroForMix software.

Authors:  Hsiao-Lin Hwa; Ming-Yih Wu; Wan-Chia Chung; Tsang-Ming Ko; Chih-Peng Lin; Hsiang-I Yin; Tsui-Ting Lee; James Chun-I Lee
Journal:  Int J Legal Med       Date:  2018-10-29       Impact factor: 2.686

4.  Qualitative and quantitative assessment of Illumina's forensic STR and SNP kits on MiSeq FGx™.

Authors:  Vishakha Sharma; Hoi Yan Chow; Donald Siegel; Elisa Wurmbach
Journal:  PLoS One       Date:  2017-11-09       Impact factor: 3.240

5.  Investigation of the STR loci noise distributions of PowerSeq™ Auto System.

Authors:  Xiangpei Zeng; Jonathan L King; Bruce Budowle
Journal:  Croat Med J       Date:  2017-06-14       Impact factor: 1.351

6.  Population-scale whole genome sequencing identifies 271 highly polymorphic short tandem repeats from Japanese population.

Authors:  Satoshi Hirata; Kaname Kojima; Kazuharu Misawa; Olivier Gervais; Yosuke Kawai; Masao Nagasaki
Journal:  Heliyon       Date:  2018-05-22

Review 7.  Massive parallel sequencing in forensics: advantages, issues, technicalities, and prospects.

Authors:  David Ballard; Jakub Winkler-Galicki; Joanna Wesoły
Journal:  Int J Legal Med       Date:  2020-05-25       Impact factor: 2.686

8.  TIA: algorithms for development of identity-linked SNP islands for analysis by massively parallel DNA sequencing.

Authors:  M Heath Farris; Andrew R Scott; Pamela A Texter; Marta Bartlett; Patricia Coleman; David Masters
Journal:  BMC Bioinformatics       Date:  2018-04-11       Impact factor: 3.169

Review 9.  Massively parallel sequencing techniques for forensics: A review.

Authors:  Brigitte Bruijns; Roald Tiggelaar; Han Gardeniers
Journal:  Electrophoresis       Date:  2018-08-22       Impact factor: 3.535

10.  Inter-laboratory study on standardized MPS libraries: evaluation of performance, concordance, and sensitivity using mixtures and degraded DNA.

Authors:  Petra Müller; Christian Sell; Thorsten Hadrys; Johannes Hedman; Steffi Bredemeyer; Francois-Xavier Laurent; Lutz Roewer; Sabrina Achtruth; Maja Sidstedt; Titia Sijen; Marc Trimborn; Natalie Weiler; Sascha Willuweit; Ingo Bastisch; Walther Parson
Journal:  Int J Legal Med       Date:  2019-11-19       Impact factor: 2.686

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