Literature DB >> 28263925

Image quality transfer and applications in diffusion MRI.

Daniel C Alexander1, Darko Zikic2, Aurobrata Ghosh3, Ryutaro Tanno3, Viktor Wottschel4, Jiaying Zhang3, Enrico Kaden3, Tim B Dyrby5, Stamatios N Sotiropoulos6, Hui Zhang3, Antonio Criminisi2.   

Abstract

This paper introduces a new computational imaging technique called image quality transfer (IQT). IQT uses machine learning to transfer the rich information available from one-off experimental medical imaging devices to the abundant but lower-quality data from routine acquisitions. The procedure uses matched pairs to learn mappings from low-quality to corresponding high-quality images. Once learned, these mappings then augment unseen low quality images, for example by enhancing image resolution or information content. Here, we demonstrate IQT using a simple patch-regression implementation and the uniquely rich diffusion MRI data set from the human connectome project (HCP). Results highlight potential benefits of IQT in both brain connectivity mapping and microstructure imaging. In brain connectivity mapping, IQT reveals, from standard data sets, thin connection pathways that tractography normally requires specialised data to reconstruct. In microstructure imaging, IQT shows potential in estimating, from standard "single-shell" data (one non-zero b-value), maps of microstructural parameters that normally require specialised multi-shell data. Further experiments show strong generalisability, highlighting IQT's benefits even when the training set does not directly represent the application domain. The concept extends naturally to many other imaging modalities and reconstruction problems.
Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2017        PMID: 28263925     DOI: 10.1016/j.neuroimage.2017.02.089

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  13 in total

1.  XQ-SR: Joint x-q space super-resolution with application to infant diffusion MRI.

Authors:  Geng Chen; Bin Dong; Yong Zhang; Weili Lin; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Anal       Date:  2019-06-22       Impact factor: 8.545

Review 2.  What's new and what's next in diffusion MRI preprocessing.

Authors:  Chantal M W Tax; Matteo Bastiani; Jelle Veraart; Eleftherios Garyfallidis; M Okan Irfanoglu
Journal:  Neuroimage       Date:  2021-12-26       Impact factor: 7.400

Review 3.  The Human Connectome Project: A retrospective.

Authors:  Jennifer Stine Elam; Matthew F Glasser; Michael P Harms; Stamatios N Sotiropoulos; Jesper L R Andersson; Gregory C Burgess; Sandra W Curtiss; Robert Oostenveld; Linda J Larson-Prior; Jan-Mathijs Schoffelen; Michael R Hodge; Eileen A Cler; Daniel M Marcus; Deanna M Barch; Essa Yacoub; Stephen M Smith; Kamil Ugurbil; David C Van Essen
Journal:  Neuroimage       Date:  2021-09-08       Impact factor: 7.400

4.  NODDI-DTI: Estimating Neurite Orientation and Dispersion Parameters from a Diffusion Tensor in Healthy White Matter.

Authors:  Luke J Edwards; Kerrin J Pine; Isabel Ellerbrock; Nikolaus Weiskopf; Siawoosh Mohammadi
Journal:  Front Neurosci       Date:  2017-12-20       Impact factor: 4.677

5.  Predicting Neural Response Latency of the Human Early Visual Cortex from MRI-Based Tissue Measurements of the Optic Radiation.

Authors:  Hiromasa Takemura; Kenichi Yuasa; Kaoru Amano
Journal:  eNeuro       Date:  2020-07-02

Review 6.  Building connectomes using diffusion MRI: why, how and but.

Authors:  Stamatios N Sotiropoulos; Andrew Zalesky
Journal:  NMR Biomed       Date:  2017-06-27       Impact factor: 4.044

7.  Cross-scanner and cross-protocol diffusion MRI data harmonisation: A benchmark database and evaluation of algorithms.

Authors:  Chantal Mw Tax; Francesco Grussu; Enrico Kaden; Lipeng Ning; Umesh Rudrapatna; C John Evans; Samuel St-Jean; Alexander Leemans; Simon Koppers; Dorit Merhof; Aurobrata Ghosh; Ryutaro Tanno; Daniel C Alexander; Stefano Zappalà; Cyril Charron; Slawomir Kusmia; David Ej Linden; Derek K Jones; Jelle Veraart
Journal:  Neuroimage       Date:  2019-02-01       Impact factor: 6.556

8.  Using diffusion MRI data acquired with ultra-high gradient strength to improve tractography in routine-quality data.

Authors:  C Maffei; C Lee; M Planich; M Ramprasad; N Ravi; D Trainor; Z Urban; M Kim; R J Jones; A Henin; S G Hofmann; D A Pizzagalli; R P Auerbach; J D E Gabrieli; S Whitfield-Gabrieli; D N Greve; S N Haber; A Yendiki
Journal:  Neuroimage       Date:  2021-11-12       Impact factor: 6.556

9.  Impact of b-value on estimates of apparent fibre density.

Authors:  Sila Genc; Chantal M W Tax; Erika P Raven; Maxime Chamberland; Greg D Parker; Derek K Jones
Journal:  Hum Brain Mapp       Date:  2020-03-26       Impact factor: 5.038

10.  Harmonization of diffusion MRI data sets with adaptive dictionary learning.

Authors:  Samuel St-Jean; Max A Viergever; Alexander Leemans
Journal:  Hum Brain Mapp       Date:  2020-08-26       Impact factor: 5.399

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