Literature DB >> 28262589

Mechanistic roles of protein disorder within transcription.

Sarah L Shammas1.   

Abstract

Understanding the interactions of proteins involved in transcriptional regulation is critical to describing biological systems because they control the expression profile of the cell. Yet sadly they belong to a less well biophysically characterized subset of proteins; they frequently contain long disordered regions that are highly dynamic. A key question therefore is, why? What functional roles does protein disorder play in transcriptional regulation? Experimental data exemplifying these roles are starting to emerge, with common themes being enabling complexity within networks and quick responses. Most recently a role for disorder in mediating phase transitions of membrane-less organelles has been proposed.
Copyright © 2017 The Author. Published by Elsevier Ltd.. All rights reserved.

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Year:  2017        PMID: 28262589     DOI: 10.1016/j.sbi.2017.02.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  18 in total

Review 1.  IDPs in macromolecular complexes: the roles of multivalent interactions in diverse assemblies.

Authors:  Ho Yee Joyce Fung; Melissa Birol; Elizabeth Rhoades
Journal:  Curr Opin Struct Biol       Date:  2018-01-04       Impact factor: 6.809

2.  IDDomainSpotter: Compositional bias reveals domains in long disordered protein regions-Insights from transcription factors.

Authors:  Peter S Millard; Katrine Bugge; Riccardo Marabini; Wouter Boomsma; Meike Burow; Birthe B Kragelund
Journal:  Protein Sci       Date:  2019-11-11       Impact factor: 6.725

3.  Disparate binding kinetics by an intrinsically disordered domain enables temporal regulation of transcriptional complex formation.

Authors:  Neil O Robertson; Ngaio C Smith; Athina Manakas; Mahiar Mahjoub; Gordon McDonald; Ann H Kwan; Jacqueline M Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-16       Impact factor: 11.205

4.  Molecular Simulations of Intrinsically Disordered Proteins and Their Binding Mechanisms.

Authors:  Xiakun Chu; Suhani Nagpal; Victor Muñoz
Journal:  Methods Mol Biol       Date:  2022

5.  Multiscale Modeling of Protein-RNA Condensation in and Out of Equilibrium.

Authors:  Rabia Laghmach; Isha Malhotra; Davit A Potoyan
Journal:  Methods Mol Biol       Date:  2023

6.  Understanding p300-transcription factor interactions using sequence variation and hybridization.

Authors:  Fruzsina Hóbor; Zsófia Hegedüs; Amaurys Avila Ibarra; Vencel L Petrovicz; Gail J Bartlett; Richard B Sessions; Andrew J Wilson; Thomas A Edwards
Journal:  RSC Chem Biol       Date:  2022-04-11

7.  Intrinsically Disordered Regions of the DNA-Binding Domain of Human FoxP1 Facilitate Domain Swapping.

Authors:  Exequiel Medina; Pablo Villalobos; George L Hamilton; Elizabeth A Komives; Hugo Sanabria; César A Ramírez-Sarmiento; Jorge Babul
Journal:  J Mol Biol       Date:  2020-07-28       Impact factor: 5.469

8.  Presence and structure-activity relationship of intrinsically disordered regions across mucins.

Authors:  Joseph Carmicheal; Pranita Atri; Sunandini Sharma; Sushil Kumar; Ramakanth Chirravuri Venkata; Prakash Kulkarni; Ravi Salgia; Dario Ghersi; Sukhwinder Kaur; Surinder K Batra
Journal:  FASEB J       Date:  2020-01-05       Impact factor: 5.191

Review 9.  Protein conformational dynamics and phenotypic switching.

Authors:  Prakash Kulkarni; Srisairam Achuthan; Supriyo Bhattacharya; Mohit Kumar Jolly; Sourabh Kotnala; Vitor B P Leite; Atish Mohanty; John Orban; Susmita Roy; Govindan Rangarajan; Ravi Salgia
Journal:  Biophys Rev       Date:  2021-11-27

Review 10.  A Time-Resolved Diffusion Technique for Detection of the Conformational Changes and Molecular Assembly/Disassembly Processes of Biomolecules.

Authors:  Yusuke Nakasone; Masahide Terazima
Journal:  Front Genet       Date:  2021-06-30       Impact factor: 4.599

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