| Literature DB >> 28255773 |
C Corral-Vázquez1, R Aguilar-Quesada1, P Catalina1, G Lucena-Aguilar1, G Ligero1, B Miranda1, J A Carrillo-Ávila2.
Abstract
Establishment of continuous cell lines from human normal and tumor tissues is an extended and useful methodology for molecular characterization of cancer pathophysiology and drug development in research laboratories. The exchange of these cell lines between different labs is a common practice that can compromise assays reliability due to contamination with microorganism such as mycoplasma or cells from different flasks that compromise experiment reproducibility and reliability. Great proportions of cell lines are contaminated with mycoplasma and/or are replaced by cells derived for a different origin during processing or distribution process. The scientific community has underestimated this problem and thousand of research experiment has been done with cell lines that are incorrectly identified and wrong scientific conclusions have been published. Regular contamination and authentication tests are necessary in order to avoid negative consequences of widespread misidentified and contaminated cell lines. Cell banks generate, store and distribute cell lines for research, being mandatory a consistent and continuous quality program. Methods implementation for guaranteeing both, the absence of mycoplasma and authentication in the supplied cell lines, has been performed in the Andalusian Health System Biobank. Specifically, precise results were obtained using real time PCR detection for mycoplasma and 10 STRs identification by capillary electrophoresis for cell line authentication. Advantages and disadvantages of these protocols are discussed.Entities:
Keywords: Biobanking; Cell line authentication; Mycoplasma; PCR; Quality control; STRs
Mesh:
Substances:
Year: 2017 PMID: 28255773 PMCID: PMC5429902 DOI: 10.1007/s10561-017-9617-6
Source DB: PubMed Journal: Cell Tissue Bank ISSN: 1389-9333 Impact factor: 1.522
Fig. 1Representative negative and positive results for mycoplasma detection. a Conventional PCR + Bioanalyzer, b Real-time PCR
Fig. 2Results obtained using 5 STRs loci detection method. Four cell lines were compared with the original tissue (A and A′, B and B′, C and C′, D and D′), 3 cell lines were compared with frozen blood from the original donor (E and E′, F and F′, G and G′), and 3 cell lines were compared with FTA punch (H and H′, I and I′, J and J′)
Results obtained using multiple 10 Strs detection method
| Samples | Analized STRs | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| AMEL | CSF1PO | D13S317 | D16S539 | D21S11 | D5S818 | D7S820 | TH01 | TPOX | VWA | |
| A | X | 11, 12 | 10, 11 | 8, 9 | 28, 32.2 | 11, 13 | 10, 12 | 5, 6 | 9, 12 | 13, 15 |
| A′ | X | 11, 13 | 10, 11 | 8, 9 | 28, 32.2 | 11, 13 | 10, 12 | 5, 6 | 9, 12 | 13, 15 |
| B | X | 10, 12 | 8, 11 | 10, 13 | 29.2, 33.2 | 11, 12 | 8, 12 | 7, 9 | 8, 11 | 16, 18 |
| B′ | X | 10, 12 | 8, 11 | 10, 13 | 29.2, 33.2 | 11, 12 | 8, 12 | 7, 9 | 8, 11 | 16, 18 |
| C | X | 10, 11 | 9, 11 | 8, 10 | 29, 33.2 | 11, 12 | 10, 11 | 6, 9 | 8, 11 | 14, 15 |
| C′ | X | 10, 12 | 9, 11 | 8, 10 | 29, 33.2 | 11, 12 | 10, 11 | 6, 9 | 8, 11 | 14, 15 |
| D | X | 11, 12 | 9, 13 | 9, 10 | 29 | 14, 16 | 9, 12 | 6, 10 | 8, 12 | 16 |
| D′ | X | 11, 13 | 9, 13 | 9, 10 | 29 | 14, 16 | 9, 12 | 6, 10 | 8, 12 | 16 |
| E | X | 12 | 11, 12 | 9, 13 | 31.2, 32.2 | 10, 12 | 10, 11 | 6, 8 | 8, 10 | 18 |
| E′ | X | 12 | 11, 12 | 9, 13 | 31.2, 32.2 | 10, 12 | 10, 11 | 6, 8 | 8, 10 | 18 |
| F | X | 11, 12 | 8, 13 | 10, 11 | 29, 30 | 11 | 9, 11 | 7, 9 | 8, 10 | 18 |
| F′ | X | 11, 12 | 8, 13 | 10, 11 | 29, 30 | 11 | 9, 11 | 7, 9 | 8, 10 | 18 |
| G | X | 11, 12 | 12 | 11 | 29, 30 | 11 | 9 | 6, 9 | 8, 12 | 15, 18 |
| G′ | X | 11, 12 | 12 | 11 | 29, 30 | 11 | 9 | 6, 9 | 8, 12 | 15, 18 |
| H | X, Y | 10, 12 | 12 | 12, 13 | 29, 30 | 10, 12 | 10 | 7 | 7, 8 | 16, 18 |
| H′ | X, Y | 10, 12 | 12 | 12, 13 | 29, 30 | 10, 12 | 10 | 7 | 7, 8 | 16, 18 |
| I | X | 10, 14 | 12 | 9, 11 | 27, 28 | 11, 12 | 8, 9 | 9 | 11 | 15, 17 |
| I′ | X | 10, 14 | 12 | 9, 11 | 27, 28 | 11, 12 | 8, 9 | 9 | 11 | 15, 17 |
| J | X, Y | 10 | 12, 13 | 8, 14 | 32.2 | 9, 12 | 10, 12 | 9, 9.3 | 11 | 15 |
| J′ | X, Y | 10 | 12, 13 | 8, 14 | 32.2 | 9, 12 | 10, 12 | 9, 9.3 | 11 | 15 |
Four cell lines were compared with the original tissue (A and A′, B and B′, C and C′, D and D′), 3 cell lines were compared with frozen blood from the original donor (E and E′, F and F′, G and G′), and 3 cell lines were compared with FTA punch (H and H′, I and I′, J and J′)
Features For conventional and real-time PCR mycoplasma detection methods
| PCR LookOut Mycoplasma pcr detection kit (Sigma-Aldrich) + Agilent Bionalizer | PCR LookOut Mycoplasma qPCR detection kit (Sigma-Aldrich) | |
|---|---|---|
| Valid results obtained | 100% | 100% |
| Sensitivity | 4–40 genome copies per assay | 4–40 genome copies per assay |
| Number of species | 19 | 66 |
| Manipulation | High | Low |
| Result | Qualitative | Quantitative |
| Interpretation complexity | Medium | Easy. Numeric result (Ct value) |
| Cost/assay | 23.73 € | 19.37 € |
Summary of special features for conventional PCR LookOut Mycoplasma PCR detection kit (Sigma Aldrich) and Agilent Bionalizer visualization, compared with real-time LookOut Mycoplasma qPCR detection kit (Sigma Aldrich)
Advantages And disadvantages for both STRS analysis methods
| 5 STRs detection method | 10 STRs detection method (Geneprint 10 System, Promega) | |
|---|---|---|
| Discrimination between individual samples | Yes | Yes |
| STRs analysed | 5 | 10 |
| Methodology | PCR + Agarose electrophoresis | PCR + Capilar electrophoresis |
| Tecnich complexity | Medium | High |
| Interpretation | Sometimes a bit subjective, depending user expertise | Objective (high sensitivity and resolution) |
| Cost/assay | 13.07 € | 47.97 € |
Advantages and disadvantages summary analysis for both detection methods: 5 STRs method and 10 STRs method (Geneprint 10 System, Promega)