Literature DB >> 28243720

Extracting cellular automaton rules from physical Langevin equation models for single and collective cell migration.

J M Nava-Sedeño1, H Hatzikirou2,3, F Peruani4, A Deutsch2.   

Abstract

Cellular automata (CA) are discrete time, space, and state models which are extensively used for modeling biological phenomena. CA are "on-lattice" models with low computational demands. In particular, lattice-gas cellular automata (LGCA) have been introduced as models of single and collective cell migration. The interaction rule dictates the behavior of a cellular automaton model and is critical to the model's biological relevance. The LGCA model's interaction rule has been typically chosen phenomenologically. In this paper, we introduce a method to obtain lattice-gas cellular automaton interaction rules from physically-motivated "off-lattice" Langevin equation models for migrating cells. In particular, we consider Langevin equations related to single cell movement (movement of cells independent of each other) and collective cell migration (movement influenced by cell-cell interactions). As examples of collective cell migration, two different alignment mechanisms are studied: polar and nematic alignment. Both kinds of alignment have been observed in biological systems such as swarms of amoebae and myxobacteria. Polar alignment causes cells to align their velocities parallel to each other, whereas nematic alignment drives cells to align either parallel or antiparallel to each other. Under appropriate assumptions, we have derived the LGCA transition probability rule from the steady-state distribution of the off-lattice Fokker-Planck equation. Comparing alignment order parameters between the original Langevin model and the derived LGCA for both mechanisms, we found different areas of agreement in the parameter space. Finally, we discuss potential reasons for model disagreement and propose extensions to the CA rule derivation methodology.

Keywords:  Collective cell migration; Ferromagnetic interaction; Fokker-Planck equation; Langevin equations; Lattice-gas cellular automata; Liquid-crystal interaction; Nematic alignment; Polar alignment; Single cell migration

Mesh:

Year:  2017        PMID: 28243720     DOI: 10.1007/s00285-017-1106-9

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  30 in total

1.  Novel type of phase transition in a system of self-driven particles.

Authors: 
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Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-11

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4.  Lattice-gas automata for the Navier-Stokes equation.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-04-07       Impact factor: 9.161

5.  Nonequilibrium clustering of self-propelled rods.

Authors:  Fernando Peruani; Andreas Deutsch; Markus Bär
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6.  Simulating invasion with cellular automata: connecting cell-scale and population-scale properties.

Authors:  Matthew J Simpson; Alistair Merrifield; Kerry A Landman; Barry D Hughes
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-08-17

7.  Self-propelled particle model for cell-sorting phenomena.

Authors:  Julio M Belmonte; Gilberto L Thomas; Leonardo G Brunnet; Rita M C de Almeida; Hugues Chaté
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8.  Effect of sensory blind zones on milling behavior in a dynamic self-propelled particle model.

Authors:  Jonathan P Newman; Hiroki Sayama
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-07-22

9.  A stochastic model for adhesion-mediated cell random motility and haptotaxis.

Authors:  R B Dickinson; R T Tranquillo
Journal:  J Math Biol       Date:  1993       Impact factor: 2.259

10.  An Emerging Allee Effect Is Critical for Tumor Initiation and Persistence.

Authors:  Katrin Böttger; Haralambos Hatzikirou; Anja Voss-Böhme; Elisabetta Ada Cavalcanti-Adam; Miguel A Herrero; Andreas Deutsch
Journal:  PLoS Comput Biol       Date:  2015-09-03       Impact factor: 4.475

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  4 in total

Review 1.  Modelling collective cell motion: are on- and off-lattice models equivalent?

Authors:  Josué Manik Nava-Sedeño; Anja Voß-Böhme; Haralampos Hatzikirou; Andreas Deutsch; Fernando Peruani
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-07-27       Impact factor: 6.237

2.  Cellular automaton models for time-correlated random walks: derivation and analysis.

Authors:  J M Nava-Sedeño; H Hatzikirou; R Klages; A Deutsch
Journal:  Sci Rep       Date:  2017-12-05       Impact factor: 4.379

3.  NudCL2 regulates cell migration by stabilizing both myosin-9 and LIS1 with Hsp90.

Authors:  Wenwen Chen; Wei Wang; Xiaoxia Sun; Shanshan Xie; Xiaoyang Xu; Min Liu; Chunxia Yang; Min Li; Wen Zhang; Wei Liu; Liangjing Wang; Tianhua Zhou; Yuehong Yang
Journal:  Cell Death Dis       Date:  2020-07-14       Impact factor: 8.469

4.  BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration.

Authors:  Andreas Deutsch; Josué Manik Nava-Sedeño; Simon Syga; Haralampos Hatzikirou
Journal:  PLoS Comput Biol       Date:  2021-06-15       Impact factor: 4.475

  4 in total

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