Literature DB >> 17930076

Simulating invasion with cellular automata: connecting cell-scale and population-scale properties.

Matthew J Simpson1, Alistair Merrifield, Kerry A Landman, Barry D Hughes.   

Abstract

Interpretive and predictive tools are needed to assist in the understanding of cell invasion processes. Cell invasion involves cell motility and proliferation, and is central to many biological processes including developmental morphogenesis and tumor invasion. Experimental data can be collected across a wide range of scales, from the population scale to the individual cell scale. Standard continuum or discrete models used in isolation are insufficient to capture this wide range of data. We develop a discrete cellular automata model of invasion with experimentally motivated rules. The cellular automata algorithm is applied to a narrow two-dimensional lattice and simulations reveal the formation of invasion waves moving with constant speed. The simulation results are averaged in one dimension-these data are used to identify the time history of the leading edge to characterize the population-scale wave speed. This allows the relationship between the population-scale wave speed and the cell-scale parameters to be determined. This relationship is analogous to well-known continuum results for Fisher's equation. The cellular automata algorithm also produces individual cell trajectories within the invasion wave that are analogous to cell trajectories obtained with new experimental techniques. Our approach allows both the cell-scale and population-scale properties of invasion to be predicted in a way that is consistent with multiscale experimental data. Furthermore we suggest that the cellular automata algorithm can be used in conjunction with individual data to overcome limitations associated with identifying cell motility mechanisms using continuum models alone.

Entities:  

Mesh:

Year:  2007        PMID: 17930076     DOI: 10.1103/PhysRevE.76.021918

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  22 in total

1.  Models of collective cell behaviour with crowding effects: comparing lattice-based and lattice-free approaches.

Authors:  Michael J Plank; Matthew J Simpson
Journal:  J R Soc Interface       Date:  2012-06-13       Impact factor: 4.118

2.  A strain-cue hypothesis for biological network formation.

Authors:  Brian N Cox
Journal:  J R Soc Interface       Date:  2010-07-29       Impact factor: 4.118

3.  Cellular automata and integrodifferential equation models for cell renewal in mosaic tissues.

Authors:  J M Bloomfield; J A Sherratt; K J Painter; G Landini
Journal:  J R Soc Interface       Date:  2010-04-07       Impact factor: 4.118

Review 4.  Simple rules for a "simple" nervous system? Molecular and biomathematical approaches to enteric nervous system formation and malformation.

Authors:  Donald F Newgreen; Sylvie Dufour; Marthe J Howard; Kerry A Landman
Journal:  Dev Biol       Date:  2013-07-06       Impact factor: 3.582

5.  Cells as strain-cued automata.

Authors:  Brian N Cox; Malcolm L Snead
Journal:  J Mech Phys Solids       Date:  2015-12-02       Impact factor: 5.471

6.  Bridging the gap between individual-based and continuum models of growing cell populations.

Authors:  Mark A J Chaplain; Tommaso Lorenzi; Fiona R Macfarlane
Journal:  J Math Biol       Date:  2019-06-10       Impact factor: 2.259

7.  Extracting cellular automaton rules from physical Langevin equation models for single and collective cell migration.

Authors:  J M Nava-Sedeño; H Hatzikirou; F Peruani; A Deutsch
Journal:  J Math Biol       Date:  2017-02-27       Impact factor: 2.259

8.  A dynamically diluted alignment model reveals the impact of cell turnover on the plasticity of tissue polarity patterns.

Authors:  Karl B Hoffmann; Anja Voss-Böhme; Jochen C Rink; Lutz Brusch
Journal:  J R Soc Interface       Date:  2017-10       Impact factor: 4.118

9.  Computational simulation methodologies for mechanobiological modelling: a cell-centred approach to neointima development in stents.

Authors:  C J Boyle; A B Lennon; M Early; D J Kelly; C Lally; P J Prendergast
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2010-06-28       Impact factor: 4.226

10.  Dynamic computational model suggests that cellular citizenship is fundamental for selective tumor apoptosis.

Authors:  Megan Olsen; Nava Siegelmann-Danieli; Hava T Siegelmann
Journal:  PLoS One       Date:  2010-05-13       Impact factor: 3.240

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