| Literature DB >> 28652721 |
Ignacio Blanco1, Patricia Bueno2, Isidro Diego3, Sergio Pérez-Holanda4, Beatriz Lara5, Francisco Casas-Maldonado6, Cristina Esquinas7, Marc Miravitlles7,8.
Abstract
The alpha-1 antitrypsin (AAT) haplotype Pi*S, when inherited along with the Pi*Z haplotype to form a Pi*SZ genotype, can be associated with pulmonary emphysema in regular smokers, and less frequently with liver disease, panniculitis, and systemic vasculitis in a small percentage of people, but this connection is less well established. Since the detection of cases can allow the application of preventive measures in patients and relatives with this congenital disorder, the objective of this study was to update the prevalence of the SZ genotype to achieve accurate estimates of the number of Pi*SZ subjects worldwide, based on studies performed according to the following criteria: 1) samples representative of the general population, 2) AAT phenotyping characterized by adequate methods, and 3) selection of studies with reliable results assessed with a coefficient of variation calculated from the sample size and 95% confidence intervals. Studies fulfilling these criteria were used to develop tables and maps with an inverse distance-weighted (IDW) interpolation method, to provide numerical and geographical information of the Pi*SZ distribution worldwide. A total of 262 cohorts from 71 countries were included in the analysis. With the data provided by these cohorts, a total of 1,490,816 Pi*SZ were estimated: 708,792 in Europe; 582,984 in America and Caribbean; 85,925 in Africa; 77,940 in Asia; and 35,176 in Australia and New Zealand. Remarkably, the IDW interpolation maps predicted the Pi*SZ prevalence throughout the entire world even in areas lacking real data. These results may be useful to plan strategies for future research, diagnosis, and management of affected individuals.Entities:
Keywords: SERPINA1; SZ genotype; alpha-1 antitrypsin deficiency; genetic epidemiology; geographic information system; inverse distance-weighted interpolation; protease inhibitor
Mesh:
Substances:
Year: 2017 PMID: 28652721 PMCID: PMC5473482 DOI: 10.2147/COPD.S137852
Source DB: PubMed Journal: Int J Chron Obstruct Pulmon Dis ISSN: 1176-9106
Estimated Pi*S and Pi*Z gene frequencies, Pi*SZ gene prevalence, and Pi*SZ number in 23 European countries with reliable data
| Geographic region (number of countries) | Country (total population) | Cohort number (size) | Pi*S frequency × 1,000 (95% CI) | Pi*Z frequency × 1,000 (95% CI) | Pi*SZ prevalence [1: | Pi*SZ number (95% CI) |
|---|---|---|---|---|---|---|
| Northern Europe (8) | Denmark (5,594,000) | 2 (10,096) | 28 (26–30) | 27 (25–29) | 1:663 (562–783) | 8,435 (7,144–9,955) |
| Estonia (1,258,545) | 2 (1,636) | 13 (9–17) | 24 (19–30) | 1:1,593 (938–2,726) | 790 (462–1,342) | |
| Finland (5,498,211) | 2 (8,836) | 10 (8–12) | 19 (17–21) | 1:2,621 (2,030–3,388) | 2,098 (1,623–2,709) | |
| Iceland (335,878) | 1 (94) | 21 (7–57) | 0 (0–19) | 1: infinite | 0 (0–745) | |
| Latvia (1,965,686) | 1 (288) | 31 (19–50) | 45 (30–66) | 1:354 (151–861) | 5,546 (2,283–13,012) | |
| Lithuania (2,854,235) | 1 (1,577) | 15 (12–21) | 16 (12–21) | 1:2,030 (1,152–3,609) | 1,406 (791–2,479) | |
| Norway (5,265,158) | 4 (4,492) | 25 (22–28) | 18 (16–21) | 1:1,095 (824–1,458) | 4,808 (3,610–6,392) | |
| Sweden (9,880,604) | 11 (5,750) | 16 (14–18) | 15 (13–17) | 1:2,088 (1,553–2,812) | 4,732 (3,514–6,363) | |
| Subtotal | 32,652,317 | 24 (32,769) | 20 (15–29) | 20 (16–28) | 1:1,492 (1,020–2,234) | 27,815 (19,417–42,252) |
| Western Europe (5) | Belgium (11,409,077) | 1 (1,345) | 54 (46–63) | 17 (12–22) | 1:551 (349–876) | 20,718 (13,025–32,730) |
| France (66,836,154) | 8 (7,233) | 75 (71–80) | 16 (14–18) | 1:413 (343–499) | 161,680 (134,020–194,885) | |
| The Netherlands (17,016,967) | 4 (1,466) | 46 (39–54) | 18 (13–23) | 1:617 (396–967) | 27,586 (17,590–43,006) | |
| Republic of Ireland (4,757,976) | 1 (1,100) | 54 (45–65) | 22 (16–29) | 1:424 (266–679) | 11,230 (7,008–17,864) | |
| UK (64,430,428) | 7 (6,375) | 44 (38–51) | 14 (11–19) | 1:900 (851–1,397) | 73,973 (53,659–101,994) | |
| Subtotal | 164,450,602 | 21 (17,519) | 47 (42–54) | 17 (13–22) | 1:581 (441–882) | 295,187 (225,303–390,479) |
| Central Europe (4) | Austria (8,711,770) | 1 (868) | 22 (16–31) | 13 (9–20) | 1:1,680 (803–3,576) | 5,186 (2,436–10,844) |
| Germany (80,722,792) | 5 (2,691) | 23 (20–28) | 16 (13–20) | 1:1,337 (905–1,980) | 60,396 (40,767–89,171) | |
| Poland (38,523,261) | 5 (3,201) | 14 (11–17) | 13 (11–16) | 1:2,679 (1,751–4,113) | 14,381 (9,366–21,999) | |
| Switzerland (8,179,294) | 1 (1,148) | 38 (31–47) | 11 (7–17) | 1:1,152 (630–2,131) | 6,581 (3,557–12,028) | |
| Subtotal | 136,137,117 | 12 (7,908) | 24 (19–31) | 13 (10–18) | 1:1,712 (1,022–2,950) | 86,544 (56,127–134,042) |
| Southern Europe (3) | Italy (62,007,540) | 4 (3,586) | 39 (35–44) | 13 (11–16) | 967 (702–1,335) | 64,137 (46,440–88,366) |
| Portugal (10,833,816) | 4 (1,498) | 114 (99–132) | 21 (15–30) | 205 (125–340) | 52,836 (31,857–86,655) | |
| Spain (48,563,476) | 4 (2,458) | 104 (96–113) | 17 (14–21) | 278 (206–375) | 174,882 (129,479–235,513) | |
| Subtotal | 121,404,832 | 12 (7,542) | 86 (77–96) | 17 (13–22) | 483 (344–683) | 291,856 (207,775–410,534) |
| Eastern Europe (3) | Macedonia (2,100,025) | 4 (441) | 13 (7–24) | 8 (4–18) | 4,714 (1,195–20,386) | 446 (103–1,757) |
| Russia (142,355,415) | 16 (8,364) | 6 (5–7) | 3 (2–4) | 24,794 (15,552–39,680) | 5,742 (3,588–9,154) | |
| Serbia (7,143,921) | 1 (1,060) | 7 (4–11) | 12 (8–19) | 5,945 (2,350–15,500) | 1,202 (461–3,039) | |
| Subtotal | 151,599,361 | 21 (9,865) | 9 (5–14) | 8 (5–14) | 11,818 (6,366–25,189) | 7,389 (4,151–13,950) |
| Total | 606,244,229 | 90 (75,703) | 37 (31–45) | 15 (11–21) | 3,217 (1,841–6,388) | 708,292 (512,782–991,257) |
Estimated Pi*S and Pi*Z gene frequencies, Pi*SZ gene prevalence, and Pi*SZ number in 21 American and Caribbean countries
| Geographic region (number of countries) | Country (total population) | Cohort number (size) | Pi*S frequency × 1,000 (95% CI) | Pi*Z frequency × 1,000 (95% CI) | Pi*SZ prevalence [1: | Pi*SZ number (95% CI) |
|---|---|---|---|---|---|---|
| North America (3) | Canada (35,362,905) | 5 (4,807) | 39 (35–43) | 14 (12–16) | 1:907 (692–1,190) | 38,997 (29,728–51,077) |
| USA | 15 (17,032) | 31 (30–33) | 15 (14–17) | 1:1,018 (881–1,177) | 254,641 (220,310–294,223) | |
| Mexico (123,166,749) | 2 (3,279) | 36 (31–40) | 6 (4–8) | 1:2,484 (1,571–3,951) | 49,590 (31,172–78,423) | |
| Subtotal | 417,726,076 | 22 (25,118) | 35 (32–39) | 12 (10–14) | 1:1,469 (1,048–2,106) | 343,229 (281,210–423,723) |
| Central America and Caribbean (8) | Costa Rica (4,872,543) | 1 (3,000) | 45 (40–51) | 8 (6–10) | 1:1,439 (952–2,185) | 3,387 (2,230–5,120) |
| Cuba (11,179,995) | 1 (3,000) | 41 (37–47) | 7 (5–9) | 1:1,721 (1,116–2,668) | 6,496 (4,191–10,015) | |
| Dominican Republic (10,606,865) | 1 (3,000) | 37 (32–42) | 6 (4–9) | 1:2,134 (1,351–3,390) | 4,971 (3,129–7,851) | |
| El Salvador (6,156,670) | 1 (3,000) | 40 (35–45) | 7 (5–9) | 1:1,891 (1,213–2,964) | 3,256 (2,077–5,075) | |
| Guatemala (15,189,958) | 1 (3,000) | 33 (29–38) | 6 (4–8) | 1:2,664 (1,647–4,369) | 5,681 (3,477–9,221) | |
| Honduras (8,893,259) | 1 (3,000) | 37 (32–42) | 6 (4–9) | 1:2,134 (1,351–3,390) | 4,168 (2,623–6,583) | |
| Nicaragua (5,966,798) | 1 (3,000) | 37 (33–42) | 6 (4–9) | 1:2,124 (1,345–3,374) | 2,809 (1,769–4,435) | |
| Panama (3,705,246) | 1 (3,000) | 35 (30–40) | 6 (4–8) | 1:2,404 (1,501–3,873) | 1,541 (957–2,468) | |
| Subtotal | 66,571,334 | 8 (24,000) | 38 (34–43) | 7 (5–9) | 1:2,065 (1,310–3,277) | 32,309 (20,453–48,950) |
| South America (10) | Argentina (43,886,748) | 1 (3,000) | 33 (29–38) | 6 (4–8) | 1:2,420 (1,515–3,891) | 18,133 (11,280–28,970) |
| Bolivia (10,969,649) | 1 (3,000) | 33 (29–38) | 6 (4–8) | 1:2,629 (1,624–4,285) | 3,517 (2,158–5,693) | |
| Brazil (205,823,665) | 1 (3,000) | 48 (43–54) | 6 (4–8) | 1:1,819 (1,150–2,897) | 105,486 (66,238–166,887) | |
| Chile (17,650,114) | 1 (3,000) | 37 (32–42) | 6 (4–9) | 1:2,143 (1,357–3,406) | 8,235 (5,182–13,010) | |
| Colombia (47,220,856) | 1 (3,000) | 38 (33–43) | 6 (5–9) | 1:2,024 (1,290–3,196) | 23,327 (14,776–36,617) | |
| Ecuador (16,080,778) | 1 (3,000) | 35 (31–40) | 6 (4–8) | 1:2,370 (1,481–3,815) | 6,786 (4,216–10,855) | |
| Paraguay (6,862,812) | 1 (3,000) | 39 (34–44) | 7 (5–9) | 1:1,915 (1,227–3,004) | 3,584 (2,285–5,591) | |
| Peru (30,741,062) | 1 (3,000) | 33 (29–38) | 6 (4–8) | 1:2,571 (1,594–4,176) | 11,955 (7,361–19,291) | |
| Uruguay (3,351,016) | 1 (3,000) | 33 (28–38) | 6 (4–8) | 1:2,538 (1,579–4,106) | 1,320 (816–2,122) | |
| Venezuela (30,912,302) | 1 (3,000) | 52 (46–58) | 8 (6–10) | 1:1,231 (824–1,849) | 25,103 (16,728–37,519) | |
| Subtotal | 413,499,002 | 10 (30,000) | 39 (33–43) | 6 (4–9) | 1:2,166 (1,364–3,462) | 207,446 (131,038–326,555) |
| Total | 897,796,412 | 40 (79,118) | 37 (33–42) | 8 (6–11) | 1:1,900 (1,241–2,948) | 582,984 (432,701–799,228) |
Note:
The numbers reported for the USA refer only to the non-Hispanic white population, due to the lack of reliable studies in other ethnic groups.
Estimated Pi*S and Pi*Z gene frequencies, Pi*SZ gene prevalence, and Pi*SZ number in 10 African countries
| Geographic region (number of countries) | Country (total population) | Cohort number (size) | Pi*S frequency × 1,000 (95% CI) | Pi*Z frequency × 1,000 (95% CI) | Pi*SZ prevalence [1: | Pi*SZ number (95% CI) |
|---|---|---|---|---|---|---|
| North Africa (6) | Cameroon (24,360,803) | 1 (266) | 6 (1–18) | 0 (0–7) | 1: infinite | 0 (0–6,000) |
| Cape Verde Islands (553,432) | 1 (202) | 32 (18–56) | 2 (0–16) | 1:6,278 (563–215,180) | 88 (3–983) | |
| Morocco (33,655,786) | 1 (439) | 2 (0–9) | 1 (0–7) | 1:192,721 (–) | 175 (2–4,532) | |
| Nigeria (186,053,386) | 3 (564) | 63 (50–80) | 3 (1–10) | 1:2,209 (643–8,695) | 84,225 (21,398–289,552) | |
| Somalia (10,817,350) | 1 (347) | 17 (9–30) | 11 (5–23) | 1:2,509 (688–9,913) | 1,437 (312–5,986) | |
| Tunisia (10,937,521) | 5 (1,838) | 8 (5–11) | 0 (0–1) | 1: infinite | 0 (0–245) | |
| Subtotal | 242,017,475 | 12 (3,656) | 21 (14–34) | 3 (1–11) | – | 85,925 (21,715–307,298) |
| Central and South Africa (4) | Democratic Republic of the Congo (81,331,050) | 1 (132) | 0 (0–14) | 0 (0–14) | 1: infinite | 0 (0–31,319) |
| Mozambique (25,930,150) | 1 (274) | 2 (0–12) | 0 (0–7) | 1: infinite | 0 (0–4,093) | |
| Republic of the Congo (4,852,412) | 2 (237) | 8 (3–23) | 0 (0–8) | 1: infinite | 0 (0–1,729) | |
| South Africa (54,300,704) | 1 (732) | 37 (28–48) | 0 (0–2) | 1: infinite | 0 (0–13,173) | |
| Subtotal | 166,414,316 | 5 (1,375) | 12 (8–24) | 0 (0–8) | 1: infinite | 0 (0–50,314) |
| Total | 408,431,791 | 17 (5,031) | 17 (11–30) | 1.4 (0.5–9) | – | 85,925 (21,715–357,612) |
Estimated Pi*S and Pi*Z gene frequencies, Pi*SZ gene prevalence, and Pi*SZ number in 15 Asian countries
| Geographic region (number of countries) | Country (total population) | Cohort number (size) | Pi*S frequency × 1,000 (95% CI) | Pi*Z frequency × 1,000 (95% CI) | Pi*SZ prevalence [1: | Pi*SZ number (95% CI) |
|---|---|---|---|---|---|---|
| Middle East (1) | Iran (82,801,633) | 6 (1,348) | 8 (5–12) | 7 (4–11) | 1:9,614 (3,841–24,716) | 8,612 (3,350–21,556) |
| Central Asia (1) | Kazakhstan (18,360,353) | 4 (417) | 0 (0–4) | 2 (0–9) | 1: infinite | 0 (0–1,560) |
| Subtotal | 101,161,986 | 10 (1,765) | 4 (2–8) | 4 (2–10) | 1: infinite | 8,612 (3,350–23,116) |
| East & Southeast Asia (10) | China (1,373,541,278) | 19 (6,594) | 0 (0–2) | 0 (0–0.3) | 1: infinite | 0 (0–1,307) |
| Indonesia (258,316,051) | 5 (724) | 0 (0–2) | 0 (0–2) | 1: infinite | 0 (0–3,344) | |
| Japan (126,702,133) | 7 (6,010) | 0 (0–8) | 0 (0–6) | 1: infinite | 11 (0–13) | |
| Malaysia (30,949,962) | 2 (1,279) | 16 (12–22) | 0 (0–1) | 1: infinite | 0 (0–1,953) | |
| Mongolia (3,031,330) | 1 (505) | 0 (0–4) | 0 (0–4) | 1: infinite | 0 (0–81) | |
| Papua New Guinea (6,791,317) | 2 (337) | 4 (1–14) | 0 (0–5) | 1: infinite | 0 (0–1,045) | |
| Philippines (102,624,209) | 1 (243) | 4 (0–16) | 0 (0–7) | 1: infinite | 0 (0–25,537) | |
| Singapore (5,781,728) | 2 (545) | 5 (2–11) | 0 (0–3) | 1: infinite | 0 (0–443) | |
| South Korea (50,924,172) | 2 (487) | 0 (0–4) | 6 (2–14) | 1: infinite | 0 (0–5,417) | |
| Thailand (68,200,824) | 2 (852) | 20 (14–28) | 11 (7–18) | 1:2,247 (1,005–5,136) | 30,347 (13,280–67,843) | |
| Subtotal | 2,026,863,004 | 43 (17,576) | 5 (3–11) | 2 (1–7) | – | 30,357 (13,279–107,005) |
| South Asia (3) | Nepal (29,033,914) | 1 (144) | 0 (0–13) | 0 (0–12) | 1: infinite | 0 (0–9,406) |
| Pakistan (201,995,540) | 1 (269) | 11 (4–25) | 9 (3–23) | 1:4,824 (863–32,132) | 41,872 (6,286–234,183) | |
| India (1,266,883,598) | 11 (1,599) | 0 (0–17) | 0.6 (0.1–2) | 1:426,134 (46,153–6,050,151) | 2,973 (209–27,449) | |
| Subtotal | 1,497,913,052 | 13 (2,012) | 4 (1–18) | 4 (1–12) | – | 44,845 (6,495–261,632) |
| Total | 4,256,049,980 | 106 (38,682) | 4.5 (4–9) | 3 (1–10) | – | 77,940 (33,258–260,242) |
Estimated Pi*S and Pi*Z gene frequencies, Pi*SZ gene prevalence, and Pi*SZ number in Australia and New Zealand
| Geographic region (number of countries) | Country (total population) | Cohort number (size) | Pi*S frequency × 1,000 (95% CI) | Pi*Z frequency × 1,000 (95% CI) | Pi*SZ prevalence [1: | Pi*SZ number (95% CI) |
|---|---|---|---|---|---|---|
| Australia and New Zealand (2) | Australia (22,992,654) | 8 (5,536) | 44 (41–48) | 13 (11–16) | 1:840 (656–1,077) | 27,380 (21,349–35,068) |
| New Zealand (4,474,549) | 1 (1,303) | 39 (32–47) | 22 (17–29) | 1:574 (365–909) | 7,796 (4,920–12,275) | |
| Total | 27,467,203 | 9 (6,839) | 41 (37–47) | 17 (14–22) | 1:707 (510–993) | 35,176 (26,269–47,343) |
Abbreviation: CI, confidential interval.
Figure 1Distribution of SZ prevalence in Europe.
Notes: In this IDW interpolation map of the Pi*SZ prevalence in European countries, black points indicate the places where the studies were conducted. The areas colored in red correspond to the regions with the highest prevalence (ie, south, west, and north of Europe), those in yellow and green have moderate prevalences (eg, central Europe), and those in blue (ie, Iceland and the most extreme regions of northern, southern, and eastern Europe) are the areas with the lowest prevalences.
Abbreviation: IDW, inverse distance-weighted.
Figure 2Distribution of SZ prevalence in the world.
Notes: In this worldwide IDW interpolation map of Pi*SZ prevalence, black points indicate the places where the studies were conducted. The red areas correspond to the regions with the highest prevalences (eg, Europe, large areas of the USA and Canada, southeast Australia, and New Zealand). Yellow areas indicate moderate prevalences (eg, Mexico, Central and South America, and isolated areas of Africa and Southeast Asia). Finally, those colored in blues (such as Africa, Asia, and extreme regions of Europe, North America, and Australia) are regions with very low or nonexistent Pi*SZ prevalence.
Abbreviation: IDW, inverse distance-weighted.