Literature DB >> 28239686

Probing of Amyloid Aβ (14-23) Trimers by Single-Molecule Force Spectroscopy.

Sibaprasad Maity1, Yuri L Lyubchenko1.   

Abstract

Self-assembly and aggregation of amyloid peptides, such as Aβ(1-40) and Aβ(1-42), lead to the development of Alzheimer disease and similar neurodegenerative disorders associated with protein aggregation. The structures of large aggregates, specifically fibrils, are well characterized. However, our understanding about the structure of oligomeric forms of amyloids is incomplete and needs to be expanded, particularly given the finding that oligomeric rather than fibrillar amyloid morphologies are neurotoxic. This lack of knowledge is primarily due to the existence of transient oligomeric forms that require the use of non-traditional approaches capable of probing transiently existing amyloid forms. We have recently developed the Single-Molecule Force Spectroscopy (SMFS) approach enabling us to probe dimeric forms of amyloids. These studies suggest that the assembly of amyloid proteins into dimers leads to extremely stabilized amyloids in non-native, misfolded states [1]. Herein, we applied the SMFS approach to probe amyloid trimers. We used the Aβ(14-23) segment of Aβ42 protein that is responsible for full-size protein aggregation. The dimerization of this peptide was recently characterized [2]. The dimeric form of Aβ (14-23) was assembled by the use of a tandem Aβ(14-23)-YNGK-Aβ(14-23), in which the YNGK motif between the two Aβ(14-23) monomers makes a β turn to form a hairpin loop with an antiparallel arrangement of Aβ(14-23) monomers[3]. The Aβ(14-23) monomer was tethered to the AFM tip, and trimers were formed by approaching the tip to the mica surface on which the Aβ(14-23)-YNGK-Aβ(14-23) dimer was immobilized via a polyethylene glycol tether. We identified trimers by rupture forces that were considerably larger than those for dimers. Models for the trimer assembly process are discussed.

Entities:  

Keywords:  Amyloid Peptide; Dimer-Monomer Interaction; Dynamic force spectroscopy; F-D curve

Year:  2015        PMID: 28239686      PMCID: PMC5321571     

Source DB:  PubMed          Journal:  Jacobs J Mol Transl Med


  57 in total

Review 1.  Aβ oligomer-induced synapse degeneration in Alzheimer's disease.

Authors:  Kyle C Wilcox; Pascale N Lacor; Jason Pitt; William L Klein
Journal:  Cell Mol Neurobiol       Date:  2011-05-03       Impact factor: 5.046

2.  A flexible nanoarray approach for the assembly and probing of molecular complexes.

Authors:  Alexey V Krasnoslobodtsev; Yuliang Zhang; Ekaterina Viazovkina; Alexander Gall; Chad Bertagni; Yuri L Lyubchenko
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

3.  Single-molecule assays for investigating protein misfolding and aggregation.

Authors:  Armin Hoffmann; Krishna Neupane; Michael T Woodside
Journal:  Phys Chem Chem Phys       Date:  2013-04-23       Impact factor: 3.676

Review 4.  Amyloid oligomers: formation and toxicity of Abeta oligomers.

Authors:  Masafumi Sakono; Tamotsu Zako
Journal:  FEBS J       Date:  2010-02-09       Impact factor: 5.542

5.  Pulsed hydrogen-deuterium exchange mass spectrometry probes conformational changes in amyloid beta (Aβ) peptide aggregation.

Authors:  Ying Zhang; Don L Rempel; Jun Zhang; Anuj K Sharma; Liviu M Mirica; Michael L Gross
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-19       Impact factor: 11.205

6.  Elasticity and unfolding of single molecules of the giant muscle protein titin.

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Journal:  Nature       Date:  1997-05-15       Impact factor: 49.962

Review 7.  Solid-state NMR studies of amyloid fibril structure.

Authors:  Robert Tycko
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

8.  Amyloid fibril formation by A beta 16-22, a seven-residue fragment of the Alzheimer's beta-amyloid peptide, and structural characterization by solid state NMR.

Authors:  J J Balbach; Y Ishii; O N Antzutkin; R D Leapman; N W Rizzo; F Dyda; J Reed; R Tycko
Journal:  Biochemistry       Date:  2000-11-14       Impact factor: 3.162

9.  α-Synuclein misfolding assessed with single molecule AFM force spectroscopy: effect of pathogenic mutations.

Authors:  Alexey V Krasnoslobodtsev; Ivan L Volkov; Josephat M Asiago; Jagadish Hindupur; Jean-Christophe Rochet; Yuri L Lyubchenko
Journal:  Biochemistry       Date:  2013-10-10       Impact factor: 3.162

10.  Mechanism of amyloid β-protein dimerization determined using single-molecule AFM force spectroscopy.

Authors:  Zhengjian Lv; Robin Roychaudhuri; Margaret M Condron; David B Teplow; Yuri L Lyubchenko
Journal:  Sci Rep       Date:  2013-10-07       Impact factor: 4.379

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  6 in total

1.  Polymer Nanoarray Approach for the Characterization of Biomolecular Interactions.

Authors:  Sibaprasad Maity; Ekaterina Viazovkina; Alexander Gall; Yuri L Lyubchenko
Journal:  Methods Mol Biol       Date:  2018

2.  Single-molecule probing of amyloid nano-ensembles using the polymer nanoarray approach.

Authors:  Sibaprasad Maity; Ekaterina Viazovkina; Alexander Gall; Yuri L Lyubchenko
Journal:  Phys Chem Chem Phys       Date:  2017-06-28       Impact factor: 3.676

3.  Probing Intermolecular Interactions within the Amyloid β Trimer Using a Tethered Polymer Nanoarray.

Authors:  Sibaprasad Maity; Apurba Pramanik; Yuri L Lyubchenko
Journal:  Bioconjug Chem       Date:  2018-07-18       Impact factor: 4.774

4.  Force clamp approach for characterization of nano-assembly in amyloid beta 42 dimer.

Authors:  Sibaprasad Maity; Yuri L Lyubchenko
Journal:  Nanoscale       Date:  2019-06-18       Impact factor: 7.790

5.  A Metal-free Click Chemistry Approach for the Assembly and Probing of Biomolecules.

Authors:  Sibaprasad Maity; Ekaterina Viazovkina; Alexander Gall; Yuri Lyubchenko
Journal:  J Nat Sci       Date:  2016

6.  Nanoscale Dynamics of Amyloid β-42 Oligomers As Revealed by High-Speed Atomic Force Microscopy.

Authors:  Siddhartha Banerjee; Zhiqiang Sun; Eric Y Hayden; David B Teplow; Yuri L Lyubchenko
Journal:  ACS Nano       Date:  2017-11-29       Impact factor: 15.881

  6 in total

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