Literature DB >> 23612887

Single-molecule assays for investigating protein misfolding and aggregation.

Armin Hoffmann1, Krishna Neupane, Michael T Woodside.   

Abstract

Protein misfolding and aggregation are relevant to many fields. Recently, their investigation has experienced a revival as a central topic in the research of numerous human diseases, including Parkinson's and Alzheimer's. Much has been learned from ensemble biochemical approaches, but the inherently heterogeneous nature of the underlying processes has obscured many important details. Single-molecule techniques offer unique capabilities to study heterogeneous systems, while providing high temporal and structural resolution to characterize them. In this Perspective, we give an overview of the single-molecule assays that have been applied to protein misfolding and aggregation, which are mainly based on fluorescence and force spectroscopy. We describe some of the technical challenges involved in studying aggregation at the single-molecule level and discuss what has been learned about aggregation mechanisms from the different approaches.

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Year:  2013        PMID: 23612887     DOI: 10.1039/c3cp44564j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  13 in total

1.  Protein misfolding occurs by slow diffusion across multiple barriers in a rough energy landscape.

Authors:  Hao Yu; Derek R Dee; Xia Liu; Angela M Brigley; Iveta Sosova; Michael T Woodside
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-24       Impact factor: 11.205

2.  Comparing the energy landscapes for native folding and aggregation of PrP.

Authors:  Derek R Dee; Michael T Woodside
Journal:  Prion       Date:  2016-05-03       Impact factor: 3.931

3.  Probing the Basis of α-Synuclein Aggregation by Comparing Simulations to Single-Molecule Experiments.

Authors:  Cassandra D M Churchill; Mark A Healey; Jordane Preto; Jack A Tuszynski; Michael T Woodside
Journal:  Biophys J       Date:  2019-08-16       Impact factor: 4.033

4.  Effect of acidic pH on the stability of α-synuclein dimers.

Authors:  Zhengjian Lv; Alexey V Krasnoslobodtsev; Yuliang Zhang; Daniel Ysselstein; Jean Christophe Rochet; Scott C Blanchard; Yuri L Lyubchenko
Journal:  Biopolymers       Date:  2016-10       Impact factor: 2.505

5.  Probing of Amyloid Aβ (14-23) Trimers by Single-Molecule Force Spectroscopy.

Authors:  Sibaprasad Maity; Yuri L Lyubchenko
Journal:  Jacobs J Mol Transl Med       Date:  2015-06-09

6.  Observing single protein binding by optical transmission through a double nanohole aperture in a metal film.

Authors:  Ahmed A Al Balushi; Ana Zehtabi-Oskuie; Reuven Gordon
Journal:  Biomed Opt Express       Date:  2013-08-01       Impact factor: 3.732

7.  Unfolded and intermediate states of PrP play a key role in the mechanism of action of an antiprion chaperone.

Authors:  Rafayel Petrosyan; Shubhadeep Patra; Negar Rezajooei; Craig R Garen; Michael T Woodside
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-02       Impact factor: 11.205

8.  Visualizing and trapping transient oligomers in amyloid assembly pathways.

Authors:  Emma E Cawood; Theodoros K Karamanos; Andrew J Wilson; Sheena E Radford
Journal:  Biophys Chem       Date:  2020-11-10       Impact factor: 2.352

9.  Diverse metastable structures formed by small oligomers of α-synuclein probed by force spectroscopy.

Authors:  Krishna Neupane; Allison Solanki; Iveta Sosova; Miro Belov; Michael T Woodside
Journal:  PLoS One       Date:  2014-01-24       Impact factor: 3.240

Review 10.  Confocal Spectroscopy to Study Dimerization, Oligomerization and Aggregation of Proteins: A Practical Guide.

Authors:  Yann Gambin; Mark Polinkovsky; Bill Francois; Nichole Giles; Akshay Bhumkar; Emma Sierecki
Journal:  Int J Mol Sci       Date:  2016-04-30       Impact factor: 5.923

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