Literature DB >> 28230848

Computational approaches to fMRI analysis.

Jonathan D Cohen1,2, Nathaniel Daw1,2, Barbara Engelhardt3, Uri Hasson1,2, Kai Li3, Yael Niv1,2, Kenneth A Norman1,2, Jonathan Pillow1,2, Peter J Ramadge4, Nicholas B Turk-Browne1,2, Theodore L Willke5.   

Abstract

Analysis methods in cognitive neuroscience have not always matched the richness of fMRI data. Early methods focused on estimating neural activity within individual voxels or regions, averaged over trials or blocks and modeled separately in each participant. This approach mostly neglected the distributed nature of neural representations over voxels, the continuous dynamics of neural activity during tasks, the statistical benefits of performing joint inference over multiple participants and the value of using predictive models to constrain analysis. Several recent exploratory and theory-driven methods have begun to pursue these opportunities. These methods highlight the importance of computational techniques in fMRI analysis, especially machine learning, algorithmic optimization and parallel computing. Adoption of these techniques is enabling a new generation of experiments and analyses that could transform our understanding of some of the most complex-and distinctly human-signals in the brain: acts of cognition such as thoughts, intentions and memories.

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Year:  2017        PMID: 28230848      PMCID: PMC5457304          DOI: 10.1038/nn.4499

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  87 in total

1.  Dynamic magnetic resonance imaging of human brain activity during primary sensory stimulation.

Authors:  K K Kwong; J W Belliveau; D A Chesler; I E Goldberg; R M Weisskoff; B P Poncelet; D N Kennedy; B E Hoppel; M S Cohen; R Turner
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

2.  Threshold-free cluster enhancement: addressing problems of smoothing, threshold dependence and localisation in cluster inference.

Authors:  Stephen M Smith; Thomas E Nichols
Journal:  Neuroimage       Date:  2008-04-11       Impact factor: 6.556

3.  What do differences between multi-voxel and univariate analysis mean? How subject-, voxel-, and trial-level variance impact fMRI analysis.

Authors:  Tyler Davis; Karen F LaRocque; Jeanette A Mumford; Kenneth A Norman; Anthony D Wagner; Russell A Poldrack
Journal:  Neuroimage       Date:  2014-04-21       Impact factor: 6.556

4.  Distributed Patterns of Reactivation Predict Vividness of Recollection.

Authors:  Marie St-Laurent; Hervé Abdi; Bradley R Buchsbaum
Journal:  J Cogn Neurosci       Date:  2015-06-23       Impact factor: 3.225

5.  Insight reconfigures hippocampal-prefrontal memories.

Authors:  Branka Milivojevic; Alejandro Vicente-Grabovetsky; Christian F Doeller
Journal:  Curr Biol       Date:  2015-02-26       Impact factor: 10.834

6.  Tracking problem solving by multivariate pattern analysis and Hidden Markov Model algorithms.

Authors:  John R Anderson
Journal:  Neuropsychologia       Date:  2011-07-27       Impact factor: 3.139

7.  A method for real-time visual stimulus selection in the study of cortical object perception.

Authors:  Daniel D Leeds; Michael J Tarr
Journal:  Neuroimage       Date:  2016-03-11       Impact factor: 6.556

Review 8.  Localization of cognitive operations in the human brain.

Authors:  M I Posner; S E Petersen; P T Fox; M E Raichle
Journal:  Science       Date:  1988-06-17       Impact factor: 47.728

Review 9.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

10.  Linking pattern completion in the hippocampus to predictive coding in visual cortex.

Authors:  Nicholas C Hindy; Felicia Y Ng; Nicholas B Turk-Browne
Journal:  Nat Neurosci       Date:  2016-04-11       Impact factor: 24.884

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  53 in total

1.  Transfer learning improves resting-state functional connectivity pattern analysis using convolutional neural networks.

Authors:  Pál Vakli; Regina J Deák-Meszlényi; Petra Hermann; Zoltán Vidnyánszky
Journal:  Gigascience       Date:  2018-12-01       Impact factor: 6.524

2.  Using reinforcement learning models in social neuroscience: frameworks, pitfalls and suggestions of best practices.

Authors:  Lei Zhang; Lukas Lengersdorff; Nace Mikus; Jan Gläscher; Claus Lamm
Journal:  Soc Cogn Affect Neurosci       Date:  2020-07-30       Impact factor: 3.436

3.  Relating Visual Production and Recognition of Objects in Human Visual Cortex.

Authors:  Judith E Fan; Jeffrey D Wammes; Jordan B Gunn; Daniel L K Yamins; Kenneth A Norman; Nicholas B Turk-Browne
Journal:  J Neurosci       Date:  2019-12-23       Impact factor: 6.167

4.  Finding Distributed Needles in Neural Haystacks.

Authors:  Christopher R Cox; Timothy T Rogers
Journal:  J Neurosci       Date:  2020-12-17       Impact factor: 6.167

5.  Characterizing Cortex-Wide Dynamics with Wide-Field Calcium Imaging.

Authors:  Chi Ren; Takaki Komiyama
Journal:  J Neurosci       Date:  2021-04-23       Impact factor: 6.167

Review 6.  The neural and computational systems of social learning.

Authors:  Andreas Olsson; Ewelina Knapska; Björn Lindström
Journal:  Nat Rev Neurosci       Date:  2020-03-12       Impact factor: 34.870

Review 7.  Approaches to inferring multi-regional interactions from simultaneous population recordings: Inferring multi-regional interactions from simultaneous population recordings.

Authors:  Byungwoo Kang; Shaul Druckmann
Journal:  Curr Opin Neurobiol       Date:  2020-11-20       Impact factor: 6.627

8.  Statistical prediction of the future impairs episodic encoding of the present.

Authors:  Brynn E Sherman; Nicholas B Turk-Browne
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-28       Impact factor: 11.205

Review 9.  Studying the visual brain in its natural rhythm.

Authors:  David A Leopold; Soo Hyun Park
Journal:  Neuroimage       Date:  2020-04-08       Impact factor: 6.556

10.  Intersubject representational similarity analysis reveals individual variations in affective experience when watching erotic movies.

Authors:  Pin-Hao A Chen; Eshin Jolly; Jin Hyun Cheong; Luke J Chang
Journal:  Neuroimage       Date:  2020-04-12       Impact factor: 6.556

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