Literature DB >> 28228543

Characterization of dependencies between growth and division in budding yeast.

Michael B Mayhew1,2, Edwin S Iversen2,3, Alexander J Hartemink2,3,4,5.   

Abstract

Cell growth and division are processes vital to the proliferation and development of life. Coordination between these two processes has been recognized for decades in a variety of organisms. In the budding yeast Saccharomyces cerevisiae, this coordination or 'size control' appears as an inverse correlation between cell size and the rate of cell-cycle progression, routinely observed in G1 prior to cell division commitment. Beyond this point, cells are presumed to complete S/G2/M at similar rates and in a size-independent manner. As such, studies of dependence between growth and division have focused on G1 Moreover, in unicellular organisms, coordination between growth and division has commonly been analysed within the cycle of a single cell without accounting for correlations in growth and division characteristics between cycles of related cells. In a comprehensive analysis of three published time-lapse microscopy datasets, we analyse both intra- and inter-cycle dependencies between growth and division, revisiting assumptions about the coordination between these two processes. Interestingly, we find evidence (i) that S/G2/M durations are systematically longer in daughters than in mothers, (ii) of dependencies between S/G2/M and size at budding that echo the classical G1 dependencies, and (iii) in contrast with recent bacterial studies, of negative dependencies between size at birth and size accumulated during the cell cycle. In addition, we develop a novel hierarchical model to uncover inter-cycle dependencies, and we find evidence for such dependencies in cells growing in sugar-poor environments. Our analysis highlights the need for experimentalists and modellers to account for new sources of cell-to-cell variation in growth and division, and our model provides a formal statistical framework for the continued study of dependencies between biological processes.
© 2017 The Author(s).

Entities:  

Keywords:  Bayesian hierarchical modelling; budding yeast; cell division; cell growth; size control; statistical dependencies

Mesh:

Year:  2017        PMID: 28228543      PMCID: PMC5332586          DOI: 10.1098/rsif.2016.0993

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  34 in total

1.  The effects of molecular noise and size control on variability in the budding yeast cell cycle.

Authors:  Stefano Di Talia; Jan M Skotheim; James M Bean; Eric D Siggia; Frederick R Cross
Journal:  Nature       Date:  2007-08-23       Impact factor: 49.962

2.  Precocious S-phase entry in budding yeast prolongs replicative state and increases dependence upon Rad53 for viability.

Authors:  Julia M Sidorova; Linda L Breeden
Journal:  Genetics       Date:  2002-01       Impact factor: 4.562

3.  Swe1p responds to cytoskeletal perturbation, not bud size, in S. cerevisiae.

Authors:  John J McNulty; Daniel J Lew
Journal:  Curr Biol       Date:  2005-12-20       Impact factor: 10.834

4.  The rate of cell growth is governed by cell cycle stage.

Authors:  Alexi I Goranov; Michael Cook; Marketa Ricicova; Giora Ben-Ari; Christian Gonzalez; Carl Hansen; Mike Tyers; Angelika Amon
Journal:  Genes Dev       Date:  2009-06-15       Impact factor: 11.361

5.  Cell-size maintenance: universal strategy revealed.

Authors:  Suckjoon Jun; Sattar Taheri-Araghi
Journal:  Trends Microbiol       Date:  2014-12-12       Impact factor: 17.079

Review 6.  Nutritional control of growth and development in yeast.

Authors:  James R Broach
Journal:  Genetics       Date:  2012-09       Impact factor: 4.562

7.  Do cells cycle?

Authors:  J A Smith; L Martin
Journal:  Proc Natl Acad Sci U S A       Date:  1973-04       Impact factor: 11.205

8.  A constant size extension drives bacterial cell size homeostasis.

Authors:  Manuel Campos; Ivan V Surovtsev; Setsu Kato; Ahmad Paintdakhi; Bruno Beltran; Sarah E Ebmeier; Christine Jacobs-Wagner
Journal:  Cell       Date:  2014-12-04       Impact factor: 41.582

9.  Single-Cell Analysis of Growth in Budding Yeast and Bacteria Reveals a Common Size Regulation Strategy.

Authors:  Ilya Soifer; Lydia Robert; Ariel Amir
Journal:  Curr Biol       Date:  2016-01-14       Impact factor: 10.834

Review 10.  Yeast vacuole inheritance and dynamics.

Authors:  Lois S Weisman
Journal:  Annu Rev Genet       Date:  2003       Impact factor: 16.830

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  7 in total

1.  Scaling of G1 Duration with Population Doubling Time by a Cyclin in Saccharomyces cerevisiae.

Authors:  Heidi M Blank; Michelle Callahan; Ioannis P E Pistikopoulos; Aggeliki O Polymenis; Michael Polymenis
Journal:  Genetics       Date:  2018-08-27       Impact factor: 4.562

2.  Cell region fingerprints enable highly precise single-cell tracking and lineage reconstruction.

Authors:  Andreas P Cuny; Aaron Ponti; Tomas Kündig; Fabian Rudolf; Jörg Stelling
Journal:  Nat Methods       Date:  2022-09-22       Impact factor: 47.990

3.  The Adder Phenomenon Emerges from Independent Control of Pre- and Post-Start Phases of the Budding Yeast Cell Cycle.

Authors:  Devon Chandler-Brown; Kurt M Schmoller; Yonatan Winetraub; Jan M Skotheim
Journal:  Curr Biol       Date:  2017-09-07       Impact factor: 10.834

4.  Size-Dependent Expression of the Mitotic Activator Cdc25 Suggests a Mechanism of Size Control in Fission Yeast.

Authors:  Daniel Keifenheim; Xi-Ming Sun; Edridge D'Souza; Makoto J Ohira; Mira Magner; Michael B Mayhew; Samuel Marguerat; Nicholas Rhind
Journal:  Curr Biol       Date:  2017-05-04       Impact factor: 10.834

5.  Multiple inputs ensure yeast cell size homeostasis during cell cycle progression.

Authors:  Cecilia Garmendia-Torres; Olivier Tassy; Audrey Matifas; Nacho Molina; Gilles Charvin
Journal:  Elife       Date:  2018-07-04       Impact factor: 8.140

6.  Details Matter: Noise and Model Structure Set the Relationship between Cell Size and Cell Cycle Timing.

Authors:  Felix Barber; Po-Yi Ho; Andrew W Murray; Ariel Amir
Journal:  Front Cell Dev Biol       Date:  2017-11-03

7.  A peculiar cell cycle arrest at g2/m stage during the stationary phase of growth in the wine yeast Hanseniaspora vineae.

Authors:  Luisa Vivian Schwarz; Maria Jose Valera; Ana Paula Longaray Delamare; Francisco Carrau; Sergio Echeverrigaray
Journal:  Curr Res Microb Sci       Date:  2022-03-26
  7 in total

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