| Literature DB >> 28217345 |
Sang Loon Tan1, See Mun Lee1, Peter J Heard2, Nathan R Halcovitch3, Edward R T Tiekink1.
Abstract
The title compound, [Re(C3H6NS2)(C2H3N)(CO)3], features an octa-hedrally coordinated ReI atom within a C3NS2 donor set defined by three carbonyl ligands in a facial arrangement, an aceto-nitrile N atom and two S atoms derived from a symmetrically coordinating di-thio-carbamate ligand. In the crystal, di-thio-carbamate-methyl-H⋯O(carbon-yl) inter-actions lead to supra-molecular chains along [36-1]; both di-thio-carbamate S atoms participate in intra-molecular methyl-H⋯S inter-actions. Further but weaker aceto-nitrile-C-H⋯O(carbonyl) inter-actions assemble mol-ecules in the ab plane. The nature of the supra-molecular assembly was also probed by a Hirshfeld surface analysis. Despite their weak nature, the C-H⋯O contacts are predominant on the Hirshfeld surface and, indeed, on those of related [Re(CO)3(C3H6NS2)L] structures.Entities:
Keywords: Hirshfeld surface analysis; carbonyl; crystal structure; dithiocarbamate; rhenium
Year: 2017 PMID: 28217345 PMCID: PMC5290568 DOI: 10.1107/S2056989017000755
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I), showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level.
Selected geometric parameters (Å, °)
| Re—S1 | 2.4956 (6) | Re—C5 | 1.924 (2) |
| Re—S2 | 2.5034 (6) | C1—S1 | 1.722 (2) |
| Re—N2 | 2.153 (2) | C1—S2 | 1.727 (2) |
| Re—C4 | 1.909 (3) | C1—N1 | 1.320 (3) |
| Re—C6 | 1.921 (3) | ||
| S1—Re—C5 | 169.42 (7) | N2—Re—C4 | 175.53 (9) |
| S2—Re—C6 | 168.98 (7) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C2—H2 | 0.98 | 2.59 | 3.260 (3) | 126 |
| C8—H8 | 0.98 | 2.69 | 3.332 (3) | 123 |
| C8—H8 | 0.98 | 2.69 | 3.244 (3) | 116 |
| C2—H2 | 0.98 | 2.49 | 3.030 (2) | 114 |
| C3—H3 | 0.98 | 2.64 | 3.035 (2) | 105 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2The molecular packing in (I): (a) supramolecular chain sustained by methyl-C—H⋯O(carbonyl) interactions shown as orange dashed lines, (b) view of the supramolecular layers in the ab plane with non-participating H atoms removed and (c) a view of the unit-cell contents in projection down the a axis.
Figure 3Hirshfeld d norm surface and two-dimensional fingerprint plots for (I): (a) full plot, and those decomposed into (b) O⋯H/H⋯O, (c) C⋯H/H⋯C, (d) H⋯H, (e) S⋯H/H⋯S and (f) C⋯O/O⋯C contacts.
Selected bonding parameters (Å) for (I) and literature analogues [Re(CO)3(S2CNMe2)L].
L = ammonia (NH3) (1), pyridine (py) (2), imidazole (Im) (3), pyrazole (pz) (4), triphenylphosphine (PPh3) (5), 1,3,5-triaza-7-phosphaadamantane (PTA) (6), t-butyl isocyanide (tBuNC) (7) and cyclohexyl isocyanide (CyNC) (8) (Herrick et al., 2009 ▸).
|
| Re—S1 | Re—S2 | Re—C | C≡O | Re—C | C≡O | Re—C | C≡O | Re— |
|---|---|---|---|---|---|---|---|---|---|
| ( | ( | ( | |||||||
| (1) | 2.497 (2) | 2.506 (2) | 1.915 (7) | 1.164 (8) | 1.912 (6) | 1.161 (7) | 1.916 (7) | 1.153 (9) | 2.228 (5) |
| (2) | 2.505 (2) | 2.498 (1) | 1.925 (6) | 1.147 (7) | 1.929 (5) | 1.137 (7) | 1.926 (5) | 1.141 (7) | 2.219 (4) |
| (3) | 2.501 (2) | 2.518 (3) | 1.937 (7) | 1.135 (8) | 1.914 (7) | 1.157 (9) | 1.918 (7) | 1.166 (8) | 2.189 (6) |
| (4) | 2.489 (4) | 2.501 (4) | 1.906 (14) | 1.147 (17) | 1.900 (14) | 1.153 (17) | 1.912 (13) | 1.133 (16) | 2.173 (10) |
| (5) | 2.513 (3) | 2.506 (3) | 1.910 (10) | 1.169 (13) | 1.895 (10) | 1.179 (12) | 1.931 (10) | 1.152 (12) | 2.474 (3) |
| (6) | 2.527 (5) | 2.529 (4) | 1.925 (15) | 1.147 (19) | 1.898 (16) | 1.160 (20) | 1.983 (18) | 1.110 (20) | 2.437 (5) |
| (7) | 2.512 (3) | 2.521 (2) | 1.906 (7) | 1.176 (9) | 1.941 (8) | 1.137 (9) | 1.955 (8) | 1.152 (9) | 2.102 (7) |
| (8) | 2.502 (2) | 2.512 (2) | 1.914 (9) | 1.142 (12) | 1.908 (10) | 1.168 (12) | 1.953 (9) | 1.125 (11) | 2.082 (9) |
| (I) | 2.496 (1) | 2.503 (1) | 1.924 (2) | 1.150 (3) | 1.921 (3) | 1.145 (3) | 1.909 (3) | 1.155 (3) | 2.153 (2) |
Figure 4Percentage contributions of the different close contacts to the Hirshfeld surfaces of (I) and 1–8.
Experimental details
| Crystal data | |
| Chemical formula | [Re(C3H6NS2)(C2H3N)(CO)3] |
|
| 431.49 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 100 |
|
| 5.7442 (1), 7.5022 (1), 14.6644 (2) |
| α, β, γ (°) | 91.496 (1), 95.517 (1), 102.371 (1) |
|
| 613.71 (2) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 10.23 |
| Crystal size (mm) | 0.15 × 0.11 × 0.11 |
| Data collection | |
| Diffractometer | Agilent SuperNova Dual Source diffractometer with an AtlasS2 detector |
| Absorption correction | Gaussian ( |
|
| 0.371, 0.503 |
| No. of measured, independent and observed [ | 32146, 3244, 3153 |
|
| 0.033 |
| (sin θ/λ)max (Å−1) | 0.698 |
| Refinement | |
|
| 0.016, 0.035, 1.09 |
| No. of reflections | 3244 |
| No. of parameters | 148 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.80, −1.21 |
Computer programs: CrysAlis PRO (Rigaku Oxford Diffraction, 2015 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| [Re(C3H6NS2)(C2H3N)(CO)3] | |
| Triclinic, | |
| Mo | |
| Cell parameters from 22533 reflections | |
| θ = 3.0–29.4° | |
| α = 91.496 (1)° | µ = 10.23 mm−1 |
| β = 95.517 (1)° | |
| γ = 102.371 (1)° | Block, colourless |
| 0.15 × 0.11 × 0.11 mm |
| Agilent SuperNova Dual Source diffractometer with an AtlasS2 detector | 3244 independent reflections |
| Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source | 3153 reflections with |
| Mirror monochromator | |
| ω scans | θmax = 29.7°, θmin = 2.8° |
| Absorption correction: gaussian (CrysAlis PRO; Rigaku Oxford Diffraction, 2015) | |
| 32146 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.002 | |
| 3244 reflections | Δρmax = 0.80 e Å−3 |
| 148 parameters | Δρmin = −1.21 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Re | 0.53372 (2) | 0.29366 (2) | 0.78801 (2) | 0.01195 (4) | |
| S1 | 0.40857 (10) | 0.56377 (8) | 0.71937 (4) | 0.01596 (12) | |
| S2 | 0.74400 (10) | 0.37175 (8) | 0.64780 (4) | 0.01389 (11) | |
| O1 | 0.1152 (3) | 0.0231 (3) | 0.68068 (14) | 0.0259 (4) | |
| O2 | 0.7673 (3) | −0.0198 (3) | 0.85255 (14) | 0.0258 (4) | |
| O3 | 0.2514 (3) | 0.2703 (3) | 0.95601 (13) | 0.0267 (4) | |
| N1 | 0.6870 (4) | 0.6973 (3) | 0.58960 (14) | 0.0156 (4) | |
| N2 | 0.8304 (4) | 0.4965 (3) | 0.85327 (14) | 0.0151 (4) | |
| C1 | 0.6222 (4) | 0.5632 (3) | 0.64470 (16) | 0.0132 (4) | |
| C2 | 0.5732 (5) | 0.8540 (3) | 0.58562 (18) | 0.0203 (5) | |
| H2A | 0.4691 | 0.8457 | 0.5280 | 0.031* | |
| H2B | 0.6968 | 0.9672 | 0.5888 | 0.031* | |
| H2C | 0.4773 | 0.8542 | 0.6374 | 0.031* | |
| C3 | 0.8671 (4) | 0.6924 (3) | 0.52607 (17) | 0.0190 (5) | |
| H3A | 0.9870 | 0.6289 | 0.5534 | 0.028* | |
| H3B | 0.9456 | 0.8176 | 0.5137 | 0.028* | |
| H3C | 0.7895 | 0.6277 | 0.4685 | 0.028* | |
| C4 | 0.2721 (4) | 0.1247 (3) | 0.72181 (17) | 0.0174 (5) | |
| C5 | 0.6800 (4) | 0.0972 (3) | 0.82800 (17) | 0.0169 (5) | |
| C6 | 0.3585 (4) | 0.2794 (3) | 0.89373 (17) | 0.0176 (5) | |
| C7 | 0.9880 (4) | 0.6097 (3) | 0.88229 (16) | 0.0155 (5) | |
| C8 | 1.1894 (5) | 0.7539 (4) | 0.91890 (18) | 0.0211 (5) | |
| H8A | 1.3395 | 0.7194 | 0.9075 | 0.032* | |
| H8B | 1.1849 | 0.7720 | 0.9851 | 0.032* | |
| H8C | 1.1795 | 0.8676 | 0.8888 | 0.032* |
| Re | 0.00998 (5) | 0.01241 (5) | 0.01239 (5) | 0.00051 (4) | 0.00076 (3) | −0.00140 (3) |
| S1 | 0.0137 (3) | 0.0178 (3) | 0.0177 (3) | 0.0058 (2) | 0.0031 (2) | −0.0009 (2) |
| S2 | 0.0137 (3) | 0.0131 (3) | 0.0157 (3) | 0.0040 (2) | 0.0036 (2) | −0.0003 (2) |
| O1 | 0.0174 (9) | 0.0261 (10) | 0.0292 (10) | −0.0028 (8) | −0.0038 (8) | −0.0079 (8) |
| O2 | 0.0241 (10) | 0.0208 (9) | 0.0329 (11) | 0.0067 (8) | −0.0005 (8) | 0.0043 (8) |
| O3 | 0.0248 (10) | 0.0359 (11) | 0.0200 (9) | 0.0058 (9) | 0.0078 (8) | −0.0001 (8) |
| N1 | 0.0167 (10) | 0.0138 (9) | 0.0162 (10) | 0.0040 (8) | 0.0001 (8) | −0.0002 (8) |
| N2 | 0.0146 (10) | 0.0153 (10) | 0.0152 (10) | 0.0027 (8) | 0.0023 (8) | −0.0009 (8) |
| C1 | 0.0119 (10) | 0.0130 (10) | 0.0133 (11) | 0.0020 (9) | −0.0022 (8) | −0.0030 (8) |
| C2 | 0.0227 (12) | 0.0163 (11) | 0.0232 (13) | 0.0073 (10) | 0.0004 (10) | 0.0038 (10) |
| C3 | 0.0194 (12) | 0.0175 (12) | 0.0190 (12) | 0.0008 (10) | 0.0037 (10) | 0.0020 (10) |
| C4 | 0.0142 (11) | 0.0192 (12) | 0.0186 (12) | 0.0025 (10) | 0.0037 (9) | −0.0006 (10) |
| C5 | 0.0143 (11) | 0.0154 (11) | 0.0176 (12) | −0.0034 (9) | 0.0010 (9) | −0.0027 (9) |
| C6 | 0.0164 (11) | 0.0170 (11) | 0.0189 (12) | 0.0043 (10) | −0.0008 (9) | −0.0014 (9) |
| C7 | 0.0154 (11) | 0.0179 (11) | 0.0139 (11) | 0.0050 (10) | 0.0018 (9) | 0.0002 (9) |
| C8 | 0.0171 (12) | 0.0202 (12) | 0.0228 (13) | −0.0012 (10) | −0.0004 (10) | −0.0049 (10) |
| Re—S1 | 2.4956 (6) | N1—C3 | 1.463 (3) |
| Re—S2 | 2.5034 (6) | N2—C7 | 1.140 (3) |
| Re—N2 | 2.153 (2) | C2—H2A | 0.9800 |
| Re—C4 | 1.909 (3) | C2—H2B | 0.9800 |
| Re—C6 | 1.921 (3) | C2—H2C | 0.9800 |
| Re—C5 | 1.924 (2) | C3—H3A | 0.9800 |
| C1—S1 | 1.722 (2) | C3—H3B | 0.9800 |
| C1—S2 | 1.727 (2) | C3—H3C | 0.9800 |
| O1—C4 | 1.155 (3) | C7—C8 | 1.453 (3) |
| O2—C5 | 1.150 (3) | C8—H8A | 0.9800 |
| O3—C6 | 1.145 (3) | C8—H8B | 0.9800 |
| C1—N1 | 1.320 (3) | C8—H8C | 0.9800 |
| N1—C2 | 1.462 (3) | ||
| S1—Re—C5 | 169.42 (7) | S1—C1—S2 | 114.23 (13) |
| S2—Re—C6 | 168.98 (7) | N1—C2—H2A | 109.5 |
| N2—Re—C4 | 175.53 (9) | N1—C2—H2B | 109.5 |
| C4—Re—C6 | 89.79 (10) | H2A—C2—H2B | 109.5 |
| C4—Re—C5 | 91.01 (10) | N1—C2—H2C | 109.5 |
| C6—Re—C5 | 91.30 (10) | H2A—C2—H2C | 109.5 |
| C6—Re—N2 | 93.43 (9) | H2B—C2—H2C | 109.5 |
| C5—Re—N2 | 92.03 (9) | N1—C3—H3A | 109.5 |
| C4—Re—S1 | 92.99 (8) | N1—C3—H3B | 109.5 |
| C6—Re—S1 | 98.50 (7) | H3A—C3—H3B | 109.5 |
| N2—Re—S1 | 83.47 (6) | N1—C3—H3C | 109.5 |
| C4—Re—S2 | 93.39 (7) | H3A—C3—H3C | 109.5 |
| C5—Re—S2 | 99.18 (7) | H3B—C3—H3C | 109.5 |
| N2—Re—S2 | 82.89 (5) | O1—C4—Re | 179.1 (2) |
| S1—Re—S2 | 70.812 (19) | O2—C5—Re | 179.5 (2) |
| C1—S1—Re | 87.05 (8) | O3—C6—Re | 179.1 (2) |
| C1—S2—Re | 86.69 (8) | N2—C7—C8 | 179.7 (3) |
| C1—N1—C2 | 121.6 (2) | C7—C8—H8A | 109.5 |
| C1—N1—C3 | 121.8 (2) | C7—C8—H8B | 109.5 |
| C2—N1—C3 | 116.5 (2) | H8A—C8—H8B | 109.5 |
| C7—N2—Re | 175.3 (2) | C7—C8—H8C | 109.5 |
| N1—C1—S1 | 122.93 (18) | H8A—C8—H8C | 109.5 |
| N1—C1—S2 | 122.84 (18) | H8B—C8—H8C | 109.5 |
| C2—N1—C1—S1 | −2.5 (3) | Re—S1—C1—N1 | −170.0 (2) |
| C3—N1—C1—S1 | −179.31 (18) | Re—S1—C1—S2 | 10.24 (11) |
| C2—N1—C1—S2 | 177.28 (18) | Re—S2—C1—N1 | 170.0 (2) |
| C3—N1—C1—S2 | 0.5 (3) | Re—S2—C1—S1 | −10.21 (11) |
| H··· | ||||
| C2—H2 | 0.98 | 2.59 | 3.260 (3) | 126 |
| C8—H8 | 0.98 | 2.69 | 3.332 (3) | 123 |
| C8—H8 | 0.98 | 2.69 | 3.244 (3) | 116 |
| C2—H2 | 0.98 | 2.49 | 3.030 (2) | 114 |
| C3—H3 | 0.98 | 2.64 | 3.035 (2) | 105 |