| Literature DB >> 28217323 |
Andrea Martínez1, Hugo Santalla1, Fátima Garrido1, Aliou Hamady Barry2, Mohamed Gaye3, Yagamare Fall Diop1.
Abstract
The title compound, C21H36O3, contains an oxolane ring, and six defined stereocentres and may serve as a useful synthon for the synthesis of calcitriol analogues. The configurations of the chiral C atoms of the side chain were unambiguously established in the refinement. In the crystal, C-H⋯O and extremely weak O-H⋯O hydrogen bonds arising from the sterically hindered alcohol group link the mol-ecules into a three-dimensional network.Entities:
Keywords: calcitriol; crystal structure; hydrogen bonding; vitamin D
Year: 2017 PMID: 28217323 PMCID: PMC5290546 DOI: 10.1107/S2056989016020648
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1An ORTEP view of the title compound with displacement ellipsoids plotted at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3 | 0.82 | 2.67 | 3.4495 (9) | 161 |
| C2—H2 | 0.97 | 2.57 | 3.273 (3) | 130 |
Symmetry codes: (i) ; (ii) .
Figure 2The packing of the title compound showing hydrogen bonds as dashed lines. [Symmetry codes: (i)-x + 2, y − , −z + 1, (ii)-x + 1, y + , −z + 2.]
Experimental details
| Crystal data | |
| Chemical formula | C21H36O3 |
|
| 336.50 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 9.4601 (3), 6.3779 (2), 16.7425 (4) |
| β (°) | 104.196 (1) |
|
| 979.32 (5) |
|
| 2 |
| Radiation type | Cu |
| μ (mm−1) | 0.58 |
| Crystal size (mm) | 0.25 × 0.12 × 0.10 |
| Data collection | |
| Diffractometer | Bruker |
| Absorption correction | Multi-scan |
|
| 0.662, 0.753 |
| No. of measured, independent and observed [ | 13069, 3679, 3594 |
|
| 0.036 |
| (sin θ/λ)max (Å−1) | 0.613 |
| Refinement | |
|
| 0.033, 0.097, 1.05 |
| No. of reflections | 3679 |
| No. of parameters | 222 |
| No. of restraints | 1 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.14, −0.14 |
| Absolute structure | Flack |
| Absolute structure parameter | −0.07 (7) |
Computer programs: APEX3 and SAINT (Bruker, 2016 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL-2014/7 (Sheldrick, 2015b ▸) and ORTEP-3 for Windows (Farrugia, 2012 ▸).
| C21H36O3 | |
| Monoclinic, | Cu |
| Cell parameters from 9988 reflections | |
| θ = 2.4–28.6° | |
| µ = 0.58 mm−1 | |
| β = 104.196 (1)° | |
| Block, colourless | |
| 0.25 × 0.12 × 0.10 mm |
| Bruker SMART APEX CCD diffractometer | 3679 independent reflections |
| Radiation source: fine-focus sealed tube | 3594 reflections with |
| Detector resolution: 8.3333 pixels mm-1 | |
| φ and ω scans | θmax = 71.0°, θmin = 2.7° |
| Absorption correction: multi-scan | |
| 13069 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.14 e Å−3 | |
| 3679 reflections | Δρmin = −0.14 e Å−3 |
| 222 parameters | Extinction correction: SHELXL-2014/7 (Sheldrick 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 1 restraint | Extinction coefficient: 0.0034 (10) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack |
| Secondary atom site location: difference Fourier map | Absolute structure parameter: −0.07 (7) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.9190 (2) | 0.6570 (3) | 0.46585 (10) | 0.0761 (5) | |
| O2 | 0.41676 (15) | 0.5028 (2) | 0.80627 (9) | 0.0555 (4) | |
| O3 | 0.44001 (17) | 0.3383 (4) | 0.97018 (11) | 0.0768 (5) | |
| H3O | 0.480163 | 0.453143 | 0.975052 | 0.115* | |
| C1 | 0.9416 (2) | 0.6116 (3) | 0.53792 (13) | 0.0552 (5) | |
| C2 | 1.0862 (2) | 0.6426 (4) | 0.59799 (15) | 0.0651 (6) | |
| H2A | 1.147857 | 0.727399 | 0.572289 | 0.078* | |
| H2B | 1.133002 | 0.507331 | 0.611064 | 0.078* | |
| C3 | 1.0739 (2) | 0.7482 (4) | 0.67748 (15) | 0.0630 (6) | |
| H3A | 1.054571 | 0.896302 | 0.667028 | 0.076* | |
| H3B | 1.166385 | 0.735483 | 0.717955 | 0.076* | |
| C4 | 0.9536 (2) | 0.6548 (4) | 0.71321 (12) | 0.0523 (4) | |
| H4A | 0.981399 | 0.514090 | 0.732883 | 0.063* | |
| H4B | 0.943984 | 0.738532 | 0.759957 | 0.063* | |
| C5 | 0.80678 (19) | 0.6465 (3) | 0.65022 (10) | 0.0412 (4) | |
| C6 | 0.82896 (19) | 0.5162 (3) | 0.57614 (11) | 0.0456 (4) | |
| H6 | 0.868329 | 0.380487 | 0.598623 | 0.055* | |
| C7 | 0.6765 (2) | 0.4733 (4) | 0.52444 (13) | 0.0626 (6) | |
| H7A | 0.673148 | 0.343325 | 0.493967 | 0.075* | |
| H7B | 0.642601 | 0.586840 | 0.485945 | 0.075* | |
| C8 | 0.5838 (2) | 0.4576 (4) | 0.58867 (12) | 0.0562 (5) | |
| H8A | 0.502692 | 0.554932 | 0.575205 | 0.067* | |
| H8B | 0.545476 | 0.316752 | 0.589496 | 0.067* | |
| C9 | 0.68560 (18) | 0.5124 (3) | 0.67337 (10) | 0.0422 (4) | |
| H9 | 0.731850 | 0.380868 | 0.696278 | 0.051* | |
| C10 | 0.7521 (3) | 0.8691 (3) | 0.62341 (14) | 0.0589 (5) | |
| H10A | 0.653632 | 0.862000 | 0.590462 | 0.088* | |
| H10B | 0.813277 | 0.930699 | 0.591728 | 0.088* | |
| H10C | 0.755209 | 0.953355 | 0.671323 | 0.088* | |
| C11 | 0.6037 (2) | 0.5963 (3) | 0.73561 (12) | 0.0474 (4) | |
| H11 | 0.553105 | 0.724547 | 0.712223 | 0.057* | |
| C12 | 0.7015 (3) | 0.6528 (5) | 0.81908 (14) | 0.0695 (6) | |
| H12A | 0.766322 | 0.538155 | 0.839097 | 0.104* | |
| H12B | 0.642665 | 0.680515 | 0.857150 | 0.104* | |
| H12C | 0.757405 | 0.775343 | 0.813787 | 0.104* | |
| C13 | 0.4871 (2) | 0.4371 (3) | 0.74389 (13) | 0.0500 (4) | |
| H13 | 0.413816 | 0.429521 | 0.691234 | 0.060* | |
| C14 | 0.5382 (3) | 0.2155 (4) | 0.77004 (18) | 0.0672 (6) | |
| H14A | 0.633369 | 0.217278 | 0.808473 | 0.081* | |
| H14B | 0.543273 | 0.130859 | 0.722683 | 0.081* | |
| C15 | 0.4227 (3) | 0.1314 (4) | 0.81102 (19) | 0.0726 (7) | |
| H15A | 0.467379 | 0.066789 | 0.863599 | 0.087* | |
| H15B | 0.361078 | 0.028941 | 0.776109 | 0.087* | |
| C16 | 0.3342 (2) | 0.3267 (3) | 0.82279 (13) | 0.0532 (5) | |
| H16 | 0.240605 | 0.323844 | 0.781623 | 0.064* | |
| C17 | 0.0673 (3) | 0.1360 (5) | 0.86855 (17) | 0.0792 (8) | |
| H17A | 0.077247 | 0.115555 | 0.813379 | 0.119* | |
| H17B | 0.009832 | 0.259036 | 0.870492 | 0.119* | |
| H17C | 0.020167 | 0.016174 | 0.885197 | 0.119* | |
| C18 | 0.2170 (3) | 0.1631 (4) | 0.92637 (15) | 0.0613 (5) | |
| H18A | 0.272883 | 0.036389 | 0.924591 | 0.074* | |
| H18B | 0.205358 | 0.177567 | 0.982067 | 0.074* | |
| C19 | 0.3051 (2) | 0.3499 (3) | 0.90802 (13) | 0.0506 (4) | |
| C20 | 0.2324 (2) | 0.5598 (3) | 0.91465 (13) | 0.0543 (5) | |
| H20A | 0.298507 | 0.670669 | 0.907616 | 0.065* | |
| H20B | 0.145850 | 0.570583 | 0.869632 | 0.065* | |
| C21 | 0.1888 (3) | 0.5971 (5) | 0.99509 (15) | 0.0750 (7) | |
| H21A | 0.153005 | 0.737676 | 0.995988 | 0.113* | |
| H21B | 0.272144 | 0.577529 | 1.040541 | 0.113* | |
| H21C | 0.113814 | 0.499588 | 0.999528 | 0.113* |
| O1 | 0.1052 (13) | 0.0728 (11) | 0.0592 (9) | −0.0108 (10) | 0.0371 (9) | 0.0039 (8) |
| O2 | 0.0597 (8) | 0.0400 (7) | 0.0789 (9) | 0.0002 (6) | 0.0399 (7) | −0.0013 (6) |
| O3 | 0.0565 (8) | 0.0872 (12) | 0.0808 (11) | 0.0013 (9) | 0.0058 (8) | 0.0121 (10) |
| C1 | 0.0704 (12) | 0.0458 (10) | 0.0583 (11) | 0.0007 (9) | 0.0326 (10) | −0.0009 (9) |
| C2 | 0.0582 (11) | 0.0691 (14) | 0.0773 (14) | −0.0098 (11) | 0.0346 (11) | 0.0008 (12) |
| C3 | 0.0544 (11) | 0.0678 (14) | 0.0690 (13) | −0.0168 (10) | 0.0191 (10) | −0.0012 (10) |
| C4 | 0.0473 (9) | 0.0599 (11) | 0.0501 (9) | −0.0094 (9) | 0.0129 (8) | −0.0010 (9) |
| C5 | 0.0460 (8) | 0.0364 (9) | 0.0433 (8) | 0.0003 (7) | 0.0150 (7) | 0.0002 (7) |
| C6 | 0.0499 (9) | 0.0429 (9) | 0.0469 (9) | 0.0016 (8) | 0.0177 (7) | −0.0020 (8) |
| C7 | 0.0580 (11) | 0.0794 (16) | 0.0504 (10) | −0.0021 (11) | 0.0133 (9) | −0.0143 (10) |
| C8 | 0.0446 (9) | 0.0656 (13) | 0.0573 (11) | −0.0028 (9) | 0.0106 (8) | −0.0132 (10) |
| C9 | 0.0417 (8) | 0.0392 (9) | 0.0475 (9) | −0.0008 (7) | 0.0142 (7) | −0.0020 (7) |
| C10 | 0.0729 (13) | 0.0402 (10) | 0.0700 (13) | 0.0075 (9) | 0.0299 (11) | 0.0051 (9) |
| C11 | 0.0493 (9) | 0.0417 (9) | 0.0565 (10) | −0.0005 (7) | 0.0228 (8) | −0.0038 (8) |
| C12 | 0.0716 (13) | 0.0848 (17) | 0.0594 (12) | −0.0226 (13) | 0.0300 (10) | −0.0189 (12) |
| C13 | 0.0483 (9) | 0.0452 (10) | 0.0623 (11) | −0.0007 (8) | 0.0244 (8) | −0.0052 (8) |
| C14 | 0.0746 (14) | 0.0435 (11) | 0.0989 (18) | 0.0047 (10) | 0.0503 (14) | 0.0000 (11) |
| C15 | 0.0794 (15) | 0.0432 (11) | 0.1116 (19) | −0.0006 (11) | 0.0550 (15) | −0.0024 (12) |
| C16 | 0.0538 (10) | 0.0430 (10) | 0.0695 (12) | −0.0031 (9) | 0.0277 (9) | −0.0007 (9) |
| C17 | 0.0825 (16) | 0.0829 (18) | 0.0812 (15) | −0.0360 (14) | 0.0372 (13) | −0.0116 (14) |
| C18 | 0.0705 (13) | 0.0470 (11) | 0.0751 (13) | −0.0012 (10) | 0.0345 (11) | 0.0064 (10) |
| C19 | 0.0470 (9) | 0.0462 (10) | 0.0603 (11) | 0.0007 (8) | 0.0165 (8) | 0.0039 (8) |
| C20 | 0.0638 (11) | 0.0476 (10) | 0.0560 (11) | 0.0007 (9) | 0.0233 (9) | 0.0001 (8) |
| C21 | 0.1001 (18) | 0.0679 (15) | 0.0673 (14) | 0.0002 (13) | 0.0401 (14) | −0.0036 (12) |
| O1—C1 | 1.208 (3) | C10—H10C | 0.9600 |
| O2—C13 | 1.432 (2) | C11—C12 | 1.518 (3) |
| O2—C16 | 1.433 (2) | C11—C13 | 1.531 (3) |
| O3—C19 | 1.437 (2) | C11—H11 | 0.9800 |
| O3—H3O | 0.8200 | C12—H12A | 0.9600 |
| C1—C2 | 1.499 (3) | C12—H12B | 0.9600 |
| C1—C6 | 1.500 (3) | C12—H12C | 0.9600 |
| C2—C3 | 1.521 (3) | C13—C14 | 1.523 (3) |
| C2—H2A | 0.9700 | C13—H13 | 0.9800 |
| C2—H2B | 0.9700 | C14—C15 | 1.523 (3) |
| C3—C4 | 1.530 (3) | C14—H14A | 0.9700 |
| C3—H3A | 0.9700 | C14—H14B | 0.9700 |
| C3—H3B | 0.9700 | C15—C16 | 1.540 (3) |
| C4—C5 | 1.525 (2) | C15—H15A | 0.9700 |
| C4—H4A | 0.9700 | C15—H15B | 0.9700 |
| C4—H4B | 0.9700 | C16—C19 | 1.525 (3) |
| C5—C10 | 1.540 (3) | C16—H16 | 0.9800 |
| C5—C6 | 1.549 (2) | C17—C18 | 1.517 (4) |
| C5—C9 | 1.553 (2) | C17—H17A | 0.9600 |
| C6—C7 | 1.514 (3) | C17—H17B | 0.9600 |
| C6—H6 | 0.9800 | C17—H17C | 0.9600 |
| C7—C8 | 1.548 (3) | C18—C19 | 1.527 (3) |
| C7—H7A | 0.9700 | C18—H18A | 0.9700 |
| C7—H7B | 0.9700 | C18—H18B | 0.9700 |
| C8—C9 | 1.546 (3) | C19—C20 | 1.521 (3) |
| C8—H8A | 0.9700 | C20—C21 | 1.521 (3) |
| C8—H8B | 0.9700 | C20—H20A | 0.9700 |
| C9—C11 | 1.539 (2) | C20—H20B | 0.9700 |
| C9—H9 | 0.9800 | C21—H21A | 0.9600 |
| C10—H10A | 0.9600 | C21—H21B | 0.9600 |
| C10—H10B | 0.9600 | C21—H21C | 0.9600 |
| C13—O2—C16 | 106.49 (15) | C13—C11—H11 | 107.3 |
| C19—O3—H3O | 109.5 | C9—C11—H11 | 107.3 |
| O1—C1—C2 | 123.2 (2) | C11—C12—H12A | 109.5 |
| O1—C1—C6 | 123.6 (2) | C11—C12—H12B | 109.5 |
| C2—C1—C6 | 113.21 (17) | H12A—C12—H12B | 109.5 |
| C1—C2—C3 | 113.09 (18) | C11—C12—H12C | 109.5 |
| C1—C2—H2A | 109.0 | H12A—C12—H12C | 109.5 |
| C3—C2—H2A | 109.0 | H12B—C12—H12C | 109.5 |
| C1—C2—H2B | 109.0 | O2—C13—C14 | 103.51 (17) |
| C3—C2—H2B | 109.0 | O2—C13—C11 | 110.25 (15) |
| H2A—C2—H2B | 107.8 | C14—C13—C11 | 117.17 (17) |
| C2—C3—C4 | 113.19 (18) | O2—C13—H13 | 108.5 |
| C2—C3—H3A | 108.9 | C14—C13—H13 | 108.5 |
| C4—C3—H3A | 108.9 | C11—C13—H13 | 108.5 |
| C2—C3—H3B | 108.9 | C13—C14—C15 | 104.13 (17) |
| C4—C3—H3B | 108.9 | C13—C14—H14A | 110.9 |
| H3A—C3—H3B | 107.8 | C15—C14—H14A | 110.9 |
| C5—C4—C3 | 112.45 (16) | C13—C14—H14B | 110.9 |
| C5—C4—H4A | 109.1 | C15—C14—H14B | 110.9 |
| C3—C4—H4A | 109.1 | H14A—C14—H14B | 108.9 |
| C5—C4—H4B | 109.1 | C14—C15—C16 | 104.18 (18) |
| C3—C4—H4B | 109.1 | C14—C15—H15A | 110.9 |
| H4A—C4—H4B | 107.8 | C16—C15—H15A | 110.9 |
| C4—C5—C10 | 110.68 (17) | C14—C15—H15B | 110.9 |
| C4—C5—C6 | 107.05 (14) | C16—C15—H15B | 110.9 |
| C10—C5—C6 | 111.29 (15) | H15A—C15—H15B | 108.9 |
| C4—C5—C9 | 116.71 (14) | O2—C16—C19 | 109.67 (16) |
| C10—C5—C9 | 111.36 (15) | O2—C16—C15 | 105.70 (15) |
| C6—C5—C9 | 99.07 (14) | C19—C16—C15 | 115.24 (19) |
| C1—C6—C7 | 120.41 (17) | O2—C16—H16 | 108.7 |
| C1—C6—C5 | 111.94 (16) | C19—C16—H16 | 108.7 |
| C7—C6—C5 | 104.92 (15) | C15—C16—H16 | 108.7 |
| C1—C6—H6 | 106.2 | C18—C17—H17A | 109.5 |
| C7—C6—H6 | 106.2 | C18—C17—H17B | 109.5 |
| C5—C6—H6 | 106.2 | H17A—C17—H17B | 109.5 |
| C6—C7—C8 | 103.70 (16) | C18—C17—H17C | 109.5 |
| C6—C7—H7A | 111.0 | H17A—C17—H17C | 109.5 |
| C8—C7—H7A | 111.0 | H17B—C17—H17C | 109.5 |
| C6—C7—H7B | 111.0 | C17—C18—C19 | 115.5 (2) |
| C8—C7—H7B | 111.0 | C17—C18—H18A | 108.4 |
| H7A—C7—H7B | 109.0 | C19—C18—H18A | 108.4 |
| C9—C8—C7 | 106.92 (16) | C17—C18—H18B | 108.4 |
| C9—C8—H8A | 110.3 | C19—C18—H18B | 108.4 |
| C7—C8—H8A | 110.3 | H18A—C18—H18B | 107.5 |
| C9—C8—H8B | 110.3 | O3—C19—C20 | 109.23 (18) |
| C7—C8—H8B | 110.3 | O3—C19—C16 | 109.91 (16) |
| H8A—C8—H8B | 108.6 | C20—C19—C16 | 110.00 (16) |
| C11—C9—C8 | 113.34 (14) | O3—C19—C18 | 104.20 (17) |
| C11—C9—C5 | 120.18 (15) | C20—C19—C18 | 113.14 (16) |
| C8—C9—C5 | 103.14 (14) | C16—C19—C18 | 110.19 (17) |
| C11—C9—H9 | 106.4 | C21—C20—C19 | 115.33 (19) |
| C8—C9—H9 | 106.4 | C21—C20—H20A | 108.4 |
| C5—C9—H9 | 106.4 | C19—C20—H20A | 108.4 |
| C5—C10—H10A | 109.5 | C21—C20—H20B | 108.4 |
| C5—C10—H10B | 109.5 | C19—C20—H20B | 108.4 |
| H10A—C10—H10B | 109.5 | H20A—C20—H20B | 107.5 |
| C5—C10—H10C | 109.5 | C20—C21—H21A | 109.5 |
| H10A—C10—H10C | 109.5 | C20—C21—H21B | 109.5 |
| H10B—C10—H10C | 109.5 | H21A—C21—H21B | 109.5 |
| C12—C11—C13 | 111.35 (17) | C20—C21—H21C | 109.5 |
| C12—C11—C9 | 114.32 (16) | H21A—C21—H21C | 109.5 |
| C13—C11—C9 | 108.95 (15) | H21B—C21—H21C | 109.5 |
| C12—C11—H11 | 107.3 |
| H··· | ||||
| O3—H3 | 0.82 | 2.67 | 3.4495 (9) | 161 |
| C2—H2 | 0.97 | 2.57 | 3.273 (3) | 130 |