Literature DB >> 23424499

(7aR)-1-[(2R,5S,E)-6-Hy-droxy-5,6-dimethyl-hept-3-en-2-yl]-7a-methyl-hexa-hydro-1H-inden-4(2H)-one.

Marcos L Rivadulla1, Massene Sene, María González, Berta Covelo.   

Abstract

The chiral title compound, C(19)H(32)O(2), contains a [4.3.0]-bicyclic moiety in which the shared C-C bond presents a trans configuration and a side chain in which the C=C double bond shows an E conformation. The conformations of five- and six-membered rings are envelope (with the bridgehead atom bearing the methyl substituent as the flap) and chair, respectively, with a dihedral angle of 4.08 (17)° between the idealized planes of the rings. In the crystal, the mol-ecules are self-assembled via classical O-H⋯O hydrogen bonds, forming chains along [112]; these chains are linked by weak non-classical C-H⋯O hydrogen bonds, giving a two-dimensional supra-molecular structure parallel to (010). The absolute configuration was established according to the configuration of the starting material.

Entities:  

Year:  2013        PMID: 23424499      PMCID: PMC3569753          DOI: 10.1107/S1600536812051343

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is a precursor of the hormonally active form of vitamin D3. For general background to vitamin D3, see: Heaney (2008 ▶); Henry (2011 ▶). For related structures, see: Maehr & Uskokovic (2004 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C19H32O2 M = 292.45 Monoclinic, a = 20.057 (4) Å b = 7.3816 (15) Å c = 13.700 (3) Å β = 112.324 (4)° V = 1876.3 (6) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 293 K 0.45 × 0.36 × 0.18 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.602, T max = 0.745 4958 measured reflections 3254 independent reflections 2389 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.152 S = 1.02 3254 reflections 196 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.11 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812051343/pv2614sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812051343/pv2614Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812051343/pv2614Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H32O2F(000) = 648
Mr = 292.45Dx = 1.035 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 1729 reflections
a = 20.057 (4) Åθ = 2.2–23.0°
b = 7.3816 (15) ŵ = 0.07 mm1
c = 13.700 (3) ÅT = 293 K
β = 112.324 (4)°Prism, colourless
V = 1876.3 (6) Å30.45 × 0.36 × 0.18 mm
Z = 4
Bruker SMART 1000 CCD diffractometer3254 independent reflections
Radiation source: fine-focus sealed tube2389 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
φ and ω scansθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −23→14
Tmin = 0.602, Tmax = 0.745k = −8→8
4958 measured reflectionsl = −13→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.152H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0934P)2 + 0.0697P] where P = (Fo2 + 2Fc2)/3
3254 reflections(Δ/σ)max < 0.001
196 parametersΔρmax = 0.14 e Å3
1 restraintΔρmin = −0.11 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.31315 (12)−0.0108 (3)0.83385 (16)0.0467 (6)
H10.35240.03120.81350.056*
C20.32284 (17)−0.2166 (4)0.8512 (2)0.0663 (8)
H2A0.3046−0.25560.90390.080*
H2B0.3735−0.24840.87520.080*
C30.28017 (17)−0.3084 (4)0.7442 (2)0.0737 (8)
H3A0.3107−0.38960.72390.088*
H3B0.2394−0.37590.74690.088*
C3A0.25554 (14)−0.1495 (3)0.66904 (18)0.0554 (7)
H3A10.2968−0.11400.65160.066*
C40.19282 (15)−0.1736 (4)0.5661 (2)0.0619 (7)
O40.16051 (12)−0.3154 (3)0.53886 (15)0.0849 (7)
C50.17509 (18)−0.0054 (5)0.4997 (2)0.0807 (9)
H5A0.1294−0.02240.44110.097*
H5B0.21180.01390.47080.097*
C60.17031 (19)0.1620 (5)0.5617 (2)0.0827 (10)
H6A0.12530.15840.57270.099*
H6B0.16950.26900.52020.099*
C70.23275 (15)0.1787 (4)0.6691 (2)0.0673 (8)
H7A0.27690.20400.65820.081*
H7B0.22360.27980.70750.081*
C7A0.24264 (12)0.0069 (3)0.73468 (16)0.0472 (6)
C80.17703 (13)−0.0288 (5)0.7620 (2)0.0706 (8)
H8A0.1349−0.03860.69820.106*
H8B0.17100.06940.80380.106*
H8C0.1838−0.13970.80120.106*
C1'0.31086 (19)0.2943 (4)0.9234 (2)0.0799 (10)
H1'10.34170.34210.89050.120*
H1'20.32270.34960.99140.120*
H1'30.26150.32000.88010.120*
C2'0.32153 (14)0.0889 (4)0.93674 (19)0.0552 (7)
H2'0.28570.04050.96240.066*
C3'0.39471 (14)0.0496 (4)1.01717 (17)0.0554 (7)
H3'0.43310.08881.00040.067*
C4'0.41212 (13)−0.0327 (4)1.10809 (18)0.0578 (7)
H4'0.3744−0.07061.12680.069*
C5'0.48679 (13)−0.0715 (4)1.18480 (19)0.0564 (7)
H5'0.5196−0.03671.15030.068*
C6'0.4971 (2)−0.2739 (5)1.2070 (4)0.1075 (14)
H6'10.4895−0.33751.14250.161*
H6'20.4631−0.31561.23590.161*
H6'30.5452−0.29621.25660.161*
C7'0.50827 (14)0.0412 (5)1.2868 (2)0.0674 (8)
O7'0.58126 (10)−0.0077 (3)1.34707 (14)0.0824 (7)
H7'0.59590.04941.40260.124*
C8'0.5057 (2)0.2410 (5)1.2604 (3)0.1151 (17)
H8'10.54090.26731.23070.173*
H8'20.51590.31101.32350.173*
H8'30.45850.27151.21040.173*
C9'0.4620 (2)0.0049 (11)1.3478 (3)0.145 (2)
H9'10.47650.08221.40860.218*
H9'20.4672−0.11941.36990.218*
H9'30.41260.02871.30400.218*
U11U22U33U12U13U23
C10.0422 (12)0.0519 (14)0.0368 (10)−0.0019 (12)0.0048 (9)−0.0014 (11)
C20.0731 (18)0.0573 (17)0.0500 (13)0.0055 (14)0.0027 (13)−0.0010 (13)
C30.088 (2)0.0542 (16)0.0582 (15)0.0030 (15)0.0040 (14)−0.0063 (14)
C3A0.0536 (14)0.0559 (16)0.0444 (13)−0.0055 (12)0.0048 (11)−0.0064 (11)
C40.0613 (16)0.0701 (19)0.0438 (13)−0.0111 (15)0.0079 (12)−0.0117 (13)
O40.0868 (15)0.0816 (15)0.0583 (11)−0.0232 (13)−0.0039 (10)−0.0162 (11)
C50.086 (2)0.090 (2)0.0425 (13)−0.0127 (18)−0.0011 (13)0.0046 (16)
C60.093 (2)0.077 (2)0.0523 (16)0.0033 (18)−0.0011 (16)0.0166 (15)
C70.0736 (19)0.0615 (18)0.0467 (14)−0.0021 (16)0.0002 (13)0.0083 (13)
C7A0.0444 (13)0.0503 (14)0.0385 (10)−0.0030 (12)0.0061 (9)0.0007 (11)
C80.0474 (14)0.101 (2)0.0565 (14)−0.0084 (15)0.0117 (11)−0.0040 (16)
C1'0.095 (2)0.072 (2)0.0541 (15)0.0132 (17)0.0068 (15)−0.0143 (14)
C2'0.0507 (14)0.0651 (18)0.0419 (13)−0.0001 (12)0.0086 (11)−0.0079 (11)
C3'0.0508 (15)0.0722 (19)0.0359 (12)−0.0071 (12)0.0081 (11)−0.0076 (11)
C4'0.0484 (14)0.0715 (19)0.0470 (13)−0.0112 (13)0.0108 (11)−0.0020 (13)
C5'0.0483 (15)0.0643 (18)0.0478 (13)−0.0007 (12)0.0081 (11)−0.0007 (12)
C6'0.086 (3)0.066 (2)0.136 (3)0.0032 (18)0.003 (2)0.007 (2)
C7'0.0483 (15)0.096 (3)0.0433 (12)0.0113 (14)0.0012 (11)−0.0076 (13)
O7'0.0566 (12)0.1072 (18)0.0569 (10)0.0184 (12)−0.0083 (9)−0.0136 (12)
C8'0.097 (3)0.082 (3)0.112 (3)0.018 (2)−0.022 (2)−0.034 (2)
C9'0.094 (3)0.287 (7)0.0559 (17)0.032 (4)0.0299 (19)0.005 (3)
C1—C21.538 (4)C8—H8C0.9600
C1—C2'1.541 (3)C1'—C2'1.533 (4)
C1—C7A1.550 (3)C1'—H1'10.9600
C1—H10.9800C1'—H1'20.9600
C2—C31.545 (4)C1'—H1'30.9600
C2—H2A0.9700C2'—C3'1.491 (4)
C2—H2B0.9700C2'—H2'0.9800
C3—C3A1.515 (4)C3'—C4'1.308 (3)
C3—H3A0.9700C3'—H3'0.9300
C3—H3B0.9700C4'—C5'1.495 (3)
C3A—C41.501 (3)C4'—H4'0.9300
C3A—C7A1.545 (3)C5'—C6'1.523 (5)
C3A—H3A10.9800C5'—C7'1.540 (4)
C4—O41.213 (3)C5'—H5'0.9800
C4—C51.500 (4)C6'—H6'10.9600
C5—C61.524 (5)C6'—H6'20.9600
C5—H5A0.9700C6'—H6'30.9600
C5—H5B0.9700C7'—O7'1.427 (3)
C6—C71.532 (4)C7'—C9'1.490 (5)
C6—H6A0.9700C7'—C8'1.515 (6)
C6—H6B0.9700O7'—H7'0.8200
C7—C7A1.524 (4)C8'—H8'10.9600
C7—H7A0.9700C8'—H8'20.9600
C7—H7B0.9700C8'—H8'30.9600
C7A—C81.522 (3)C9'—H9'10.9600
C8—H8A0.9600C9'—H9'20.9600
C8—H8B0.9600C9'—H9'30.9600
C2—C1—C2'111.5 (2)H8A—C8—H8B109.5
C2—C1—C7A103.77 (19)C7A—C8—H8C109.5
C2'—C1—C7A120.50 (19)H8A—C8—H8C109.5
C2—C1—H1106.8H8B—C8—H8C109.5
C2'—C1—H1106.8C2'—C1'—H1'1109.5
C7A—C1—H1106.8C2'—C1'—H1'2109.5
C1—C2—C3107.2 (2)H1'1—C1'—H1'2109.5
C1—C2—H2A110.3C2'—C1'—H1'3109.5
C3—C2—H2A110.3H1'1—C1'—H1'3109.5
C1—C2—H2B110.3H1'2—C1'—H1'3109.5
C3—C2—H2B110.3C3'—C2'—C1'109.5 (2)
H2A—C2—H2B108.5C3'—C2'—C1108.5 (2)
C3A—C3—C2103.0 (2)C1'—C2'—C1113.7 (2)
C3A—C3—H3A111.2C3'—C2'—H2'108.3
C2—C3—H3A111.2C1'—C2'—H2'108.3
C3A—C3—H3B111.2C1—C2'—H2'108.3
C2—C3—H3B111.2C4'—C3'—C2'128.7 (3)
H3A—C3—H3B109.1C4'—C3'—H3'115.6
C4—C3A—C3119.2 (2)C2'—C3'—H3'115.6
C4—C3A—C7A111.7 (2)C3'—C4'—C5'126.3 (2)
C3—C3A—C7A105.5 (2)C3'—C4'—H4'116.8
C4—C3A—H3A1106.6C5'—C4'—H4'116.8
C3—C3A—H3A1106.6C4'—C5'—C6'110.6 (2)
C7A—C3A—H3A1106.6C4'—C5'—C7'113.2 (2)
O4—C4—C5123.5 (2)C6'—C5'—C7'112.2 (3)
O4—C4—C3A123.4 (3)C4'—C5'—H5'106.8
C5—C4—C3A113.1 (2)C6'—C5'—H5'106.8
C4—C5—C6112.5 (2)C7'—C5'—H5'106.8
C4—C5—H5A109.1C5'—C6'—H6'1109.5
C6—C5—H5A109.1C5'—C6'—H6'2109.5
C4—C5—H5B109.1H6'1—C6'—H6'2109.5
C6—C5—H5B109.1C5'—C6'—H6'3109.5
H5A—C5—H5B107.8H6'1—C6'—H6'3109.5
C5—C6—C7113.5 (3)H6'2—C6'—H6'3109.5
C5—C6—H6A108.9O7'—C7'—C9'110.5 (3)
C7—C6—H6A108.9O7'—C7'—C8'108.6 (3)
C5—C6—H6B108.9C9'—C7'—C8'109.6 (4)
C7—C6—H6B108.9O7'—C7'—C5'105.1 (2)
H6A—C6—H6B107.7C9'—C7'—C5'113.1 (3)
C7A—C7—C6112.0 (2)C8'—C7'—C5'109.7 (3)
C7A—C7—H7A109.2C7'—O7'—H7'109.5
C6—C7—H7A109.2C7'—C8'—H8'1109.5
C7A—C7—H7B109.2C7'—C8'—H8'2109.5
C6—C7—H7B109.2H8'1—C8'—H8'2109.5
H7A—C7—H7B107.9C7'—C8'—H8'3109.5
C8—C7A—C7111.0 (2)H8'1—C8'—H8'3109.5
C8—C7A—C3A111.4 (2)H8'2—C8'—H8'3109.5
C7—C7A—C3A106.98 (19)C7'—C9'—H9'1109.5
C8—C7A—C1110.87 (18)C7'—C9'—H9'2109.5
C7—C7A—C1117.3 (2)H9'1—C9'—H9'2109.5
C3A—C7A—C198.54 (18)C7'—C9'—H9'3109.5
C7A—C8—H8A109.5H9'1—C9'—H9'3109.5
C7A—C8—H8B109.5H9'2—C9'—H9'3109.5
C2'—C1—C2—C3153.7 (2)C2—C1—C7A—C875.8 (3)
C7A—C1—C2—C322.6 (3)C2'—C1—C7A—C8−49.9 (3)
C1—C2—C3—C3A6.2 (3)C2—C1—C7A—C7−155.3 (2)
C2—C3—C3A—C4−159.6 (3)C2'—C1—C7A—C779.0 (3)
C2—C3—C3A—C7A−33.2 (3)C2—C1—C7A—C3A−41.2 (2)
C3—C3A—C4—O4−0.6 (5)C2'—C1—C7A—C3A−166.8 (2)
C7A—C3A—C4—O4−124.0 (3)C2—C1—C2'—C3'59.0 (3)
C3—C3A—C4—C5−179.5 (3)C7A—C1—C2'—C3'−179.0 (2)
C7A—C3A—C4—C557.1 (3)C2—C1—C2'—C1'−178.8 (3)
O4—C4—C5—C6132.6 (3)C7A—C1—C2'—C1'−56.9 (3)
C3A—C4—C5—C6−48.5 (4)C1'—C2'—C3'—C4'117.4 (3)
C4—C5—C6—C746.1 (4)C1—C2'—C3'—C4'−118.0 (3)
C5—C6—C7—C7A−52.5 (4)C2'—C3'—C4'—C5'178.7 (3)
C6—C7—C7A—C8−63.9 (3)C3'—C4'—C5'—C6'−122.4 (4)
C6—C7—C7A—C3A57.8 (3)C3'—C4'—C5'—C7'110.6 (3)
C6—C7—C7A—C1167.2 (2)C4'—C5'—C7'—O7'−177.4 (2)
C4—C3A—C7A—C861.0 (3)C6'—C5'—C7'—O7'56.5 (3)
C3—C3A—C7A—C8−69.8 (3)C4'—C5'—C7'—C9'62.0 (4)
C4—C3A—C7A—C7−60.5 (3)C6'—C5'—C7'—C9'−64.2 (4)
C3—C3A—C7A—C7168.7 (2)C4'—C5'—C7'—C8'−60.8 (3)
C4—C3A—C7A—C1177.5 (2)C6'—C5'—C7'—C8'173.1 (3)
C3—C3A—C7A—C146.7 (2)
D—H···AD—HH···AD···AD—H···A
O7′—H7′···O4i0.822.082.876 (3)164
C3A—H3A1···O7′ii0.982.563.523 (3)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O7′—H7′⋯O4i 0.822.082.876 (3)164
C3A—H3A1⋯O7′ii 0.982.563.523 (3)166

Symmetry codes: (i) ; (ii) .

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