| Literature DB >> 28210255 |
Diego C Franco1, Camila N Signori1, Rubens T D Duarte2, Cristina R Nakayama3, Lúcia S Campos4, Vivian H Pellizari1.
Abstract
Microorganisms dominate most Antarctic marine ecosystems, in terms of biomass and taxonomic diversity, and play crucial role in ecosystem functioning due to their high metabolic plasticity. Admiralty Bay is the largest bay on King George Island (South Shetland Islands, Antarctic Peninsula) and a combination of hydro-oceanographic characteristics (bathymetry, sea ice and glacier melting, seasonal entrance of water masses, turbidity, vertical fluxes) create conditions favoring organic carbon deposition on the seafloor and microbial activities. We sampled surface sediments from 15 sites across Admiralty Bay (100-502 m total depth) and the adjacent North Bransfield Basin (693-1147 m), and used the amplicon 454-sequencing of 16S rRNA gene tags to compare the bacterial composition, diversity, and microbial community structure across environmental parameters (sediment grain size, pigments and organic nutrients) between the two areas. Marine sediments had a high abundance of heterotrophic Gammaproteobacteria (92.4% and 83.8% inside and outside the bay, respectively), followed by Alphaproteobacteria (2.5 and 5.5%), Firmicutes (1.5 and 1.6%), Bacteroidetes (1.1 and 1.7%), Deltaproteobacteria (0.8 and 2.5%) and Actinobacteria (0.7 and 1.3%). Differences in alpha-diversity and bacterial community structure were found between the two areas, reflecting the physical and chemical differences in the sediments, and the organic matter input.Entities:
Keywords: Antarctica; bacterial community structure; marine sediments; microbial diversity; polar microbiology
Year: 2017 PMID: 28210255 PMCID: PMC5288382 DOI: 10.3389/fmicb.2017.00153
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Environmental parameters measured for each sample in the sediments of Admiralty Bay and North Bransfield Basin, Western Antarctic Peninsula. Granulometry: Sand (%), Silt (%), Clay (%), Silt + Clay (%).
| Sample | Sand(%) | Silt(%) | Clay(%) | Silt + Clay(%) | Chlorophyll(mg.m-2) | Phaeopigment (mg.m-2) | Chloro/PhaeoRatio | CPE | OM (%) | Carbonate (%) | TOC (%) | Total N (%) | C/NRatio |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 0.00 | 48.93 | 51.07 | 100.00 | 1.25 | 41.68 | 0.03 | 42.93 | 3.09 | 17.46 | 0.56 | 0.07 | 7.15 |
| 2 | 1.13 | 53.13 | 45.74 | 98.87 | 4.13 | 45.09 | 0.11 | 49.22 | 2.41 | 16.61 | 0.25 | 0.07 | 3.62 |
| 3 | 0.10 | 43.52 | 56.38 | 99.90 | 0.34 | 84.53 | 0.00 | 84.87 | 5.10 | 19.31 | 0.83 | 0.12 | 6.46 |
| 4 | 9.28 | 57.38 | 33.35 | 90.72 | 2.54 | 55.80 | 0.05 | 58.34 | 2.91 | 14.93 | 0.30 | 0.08 | 4.10 |
| 5 | 29.57 | 45.35 | 25.09 | 70.43 | 3.82 | 51.66 | 0.08 | 55.48 | 2.72 | 14.38 | 0.40 | 0.05 | 7.96 |
| 6 | 1.64 | 57.06 | 41.30 | 98.36 | 3.95 | 58.52 | 0.08 | 62.47 | 3.94 | 14.47 | 0.25 | 0.06 | 4.36 |
| 7 | 2.27 | 51.52 | 46.21 | 97.73 | 5.83 | 52.50 | 0.11 | 58.32 | 2.90 | 14.33 | 0.21 | 0.06 | 3.40 |
| 8 | 2.74 | 50.80 | 46.46 | 97.26 | 0.17 | 60.17 | 0.00 | 60.34 | 3.65 | 17.52 | 0.43 | 0.08 | 5.53 |
| 9 | 1.54 | 39.11 | 59.35 | 98.46 | 8.25 | 42.92 | 0.20 | 51.17 | 2.70 | 12.23 | 0.35 | 0.06 | 6.27 |
| 10 | 10.17 | 58.23 | 31.60 | 89.83 | 4.58 | 26.57 | 0.17 | 31.15 | 2.85 | 13.74 | 0.51 | 0.06 | 8.96 |
| 11 | 20.62 | 56.20 | 23.17 | 79.38 | 1.90 | 48.01 | 0.04 | 49.91 | 2.61 | 13.19 | 0.40 | 0.06 | 6.64 |
| 12 | 6.61 | 64.94 | 28.45 | 93.39 | 0.37 | 49.22 | 0.01 | 49.59 | 3.49 | 16.73 | 0.44 | 0.07 | 6.31 |
| 13 | 16.16 | 55.50 | 28.35 | 83.84 | 0.31 | 64.41 | 0.01 | 64.72 | 6.03 | 16.51 | 0.70 | 0.08 | 8.69 |
| 14 | 17.79 | 56.85 | 25.36 | 82.21 | 0.00 | 46.51 | 0.00 | 46.51 | 3.53 | 15.30 | 0.63 | 0.08 | 7.98 |
| 15 | 20.30 | 54.48 | 25.22 | 79.70 | 0.00 | 44.45 | 0.00 | 44.45 | 3.37 | 16.21 | 0.62 | 0.07 | 8.69 |
Values of alpha-diversity estimates, using number of OTUs, ACE, Abundance-based Coverage Estimator and Simpson Index.
| Sample | Latitude (°S) | Longitude (°W) | Depth (m) | Reads | Number of OTUs | ACE | Simpson Index | Coverage |
|---|---|---|---|---|---|---|---|---|
| 1 | 62° 5′ 11.800′′ | 58° 22′ 19.300′′ | 100 | 1000 | 36 | 119.10 | 0.65 | 0.97 |
| 2 | 62° 6′ 14.000′′ | 58° 24′ 38.000′′ | 158 | 4728 | 80 | 247.32 | 0.73 | 0.98 |
| 3 | 62° 5′ 56.000′′ | 58° 26′ 15.000′′ | 105 | 8718 | 204 | 726.23 | 0.58 | 0.98 |
| 4 | 62° 6′ 15.800′′ | 58° 23′ 49.700′′ | 277 | 5004 | 76 | 261.54 | 0.79 | 0.99 |
| 5 | 62° 8′ 27.800′′ | 58° 28′ 33.200′′ | 296 | 8508 | 169 | 684.96 | 0.82 | 0.98 |
| 6 | 62° 8′ 17.700′′ | 58° 24′ 8.100′′ | 305 | 7970 | 108 | 378.77 | 0.77 | 0.99 |
| 7 | 62° 9′ 30.945′′ | 58° 25′ 25.501′′ | 493 | 11776 | 245 | 1217.65 | 0.73 | 0.98 |
| 8 | 62° 10′ 26.000′′ | 58° 23′ 41.001′′ | 502 | 5600 | 166 | 855.39 | 0.72 | 0.96 |
| 9 | 62° 12′ 38.888′′ | 58° 21′ 54.300′′ | 483 | 1894 | 50 | 288.52 | 0.84 | 0.98 |
| 10 | 62° 16′ 21.300′′ | 58° 18′ 3.003′′ | 693 | 5599 | 417 | 1520.40 | 0.42 | 0.95 |
| 11 | 62° 16′ 28.900′′ | 58° 10′ 10.800′′ | 724 | 14419 | 378 | 1794.19 | 0.75 | 0.98 |
| 12 | 62° 15′ 59.900′′ | 58° 13′ 29.800′′ | 708 | 26178 | 332 | 1744.01 | 0.80 | 0.99 |
| 13 | 62° 17′ 11.800′′ | 58° 15′ 50.002′′ | 1054 | 4722 | 141 | 464.45 | 0.72 | 0.98 |
| 14 | 62° 17′ 33.360′′ | 58° 18′ 12.600′′ | 1147 | 6161 | 194 | 706.26 | 0.72 | 0.97 |
| 15 | 62° 17′ 15.400′′ | 58° 14′ 26.100′′ | 1140 | 4990 | 341 | 1613.40 | 0.40 | 0.94 |
| Average Admiralty Bay | 83.56 | 364.63 | 0.74 | |||||
| Average North Bransfield Basin | 154.83 | 614.59 | 0.63 | |||||
| t-statistics | 3.45 | 2.95 | 1.32 | |||||
| 2.31 | 0.02 | 0.24 | ||||||