Literature DB >> 28197782

Interconnections between mRNA degradation and RDR-dependent siRNA production in mRNA turnover in plants.

Masayuki Tsuzuki1,2, Kazuki Motomura3, Naoyoshi Kumakura4, Atsushi Takeda5.   

Abstract

Accumulation of an mRNA species is determined by the balance between the synthesis and the degradation of the mRNA. Individual mRNA molecules are selectively and actively degraded through RNA degradation pathways, which include 5'-3' mRNA degradation pathway, 3'-5' mRNA degradation pathway, and RNA-dependent RNA polymerase-mediated mRNA degradation pathway. Recent studies have revealed that these RNA degradation pathways compete with each other in mRNA turnover in plants and that plants have a hidden layer of non-coding small-interfering RNA production from a set of mRNAs. In this review, we summarize the current information about plant mRNA degradation pathways in mRNA turnover and discuss the potential roles of a novel class of the endogenous siRNAs derived from plant mRNAs.

Keywords:  3′-5′ mRNA degradation; 5′-3′ mRNA degradation; Coding transcript-derived siRNA; RNA exosome; RNA quality control-siRNA; RNA silencing; RNA-dependent RNA polymerase; Virus-activated siRNA; mRNA turnover

Mesh:

Substances:

Year:  2017        PMID: 28197782     DOI: 10.1007/s10265-017-0906-8

Source DB:  PubMed          Journal:  J Plant Res        ISSN: 0918-9440            Impact factor:   2.629


  128 in total

Review 1.  MicroRNAs in Control of Plant Development.

Authors:  Chao Li; Baohong Zhang
Journal:  J Cell Physiol       Date:  2016-02       Impact factor: 6.384

2.  Plant stress granules and mRNA processing bodies are distinct from heat stress granules.

Authors:  Christian Weber; Lutz Nover; Markus Fauth
Journal:  Plant J       Date:  2008-08-06       Impact factor: 6.417

Review 3.  RNA-directed DNA methylation: an epigenetic pathway of increasing complexity.

Authors:  Marjori A Matzke; Rebecca A Mosher
Journal:  Nat Rev Genet       Date:  2014-05-08       Impact factor: 53.242

4.  Evidence that XRN4, an Arabidopsis homolog of exoribonuclease XRN1, preferentially impacts transcripts with certain sequences or in particular functional categories.

Authors:  Linda A Rymarquis; Frederic F Souret; Pamela J Green
Journal:  RNA       Date:  2011-01-11       Impact factor: 4.942

5.  ETHYLENE-INSENSITIVE5 encodes a 5'-->3' exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2.

Authors:  Gabriela Olmedo; Hongwei Guo; Brian D Gregory; Saeid D Nourizadeh; Laura Aguilar-Henonin; Hongjiang Li; Fengying An; Plinio Guzman; Joseph R Ecker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-18       Impact factor: 11.205

6.  LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development.

Authors:  Carlos Perea-Resa; Tamara Hernández-Verdeja; Rosa López-Cobollo; María del Mar Castellano; Julio Salinas
Journal:  Plant Cell       Date:  2012-12-07       Impact factor: 11.277

7.  The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins.

Authors:  Atsushi Takeda; Shintaro Iwasaki; Toshiaki Watanabe; Maki Utsumi; Yuichiro Watanabe
Journal:  Plant Cell Physiol       Date:  2008-03-14       Impact factor: 4.927

8.  Identification of a quality-control mechanism for mRNA 5'-end capping.

Authors:  Xinfu Jiao; Song Xiang; Chanseok Oh; Charles E Martin; Liang Tong; Megerditch Kiledjian
Journal:  Nature       Date:  2010-08-29       Impact factor: 49.962

9.  miR156 and miR390 regulate tasiRNA accumulation and developmental timing in Physcomitrella patens.

Authors:  Sung Hyun Cho; Ceyda Coruh; Michael J Axtell
Journal:  Plant Cell       Date:  2012-12-21       Impact factor: 11.277

10.  Arabidopsis RRP6L1 and RRP6L2 function in FLOWERING LOCUS C silencing via regulation of antisense RNA synthesis.

Authors:  Jun-Hye Shin; Julia A Chekanova
Journal:  PLoS Genet       Date:  2014-09-11       Impact factor: 5.917

View more
  10 in total

1.  Expanding the plant non-coding RNA world.

Authors:  Misato Ohtani
Journal:  J Plant Res       Date:  2017-01       Impact factor: 2.629

2.  Genetic differentiation in life history traits and thermal stress performance across a heterogeneous dune landscape in Arabidopsis lyrata.

Authors:  Guillaume Wos; Yvonne Willi
Journal:  Ann Bot       Date:  2018-08-27       Impact factor: 4.357

Review 3.  Polysomes, Stress Granules, and Processing Bodies: A Dynamic Triumvirate Controlling Cytoplasmic mRNA Fate and Function.

Authors:  Thanin Chantarachot; Julia Bailey-Serres
Journal:  Plant Physiol       Date:  2017-11-20       Impact factor: 8.340

4.  Proteasome subunit RPT2a promotes PTGS through repressing RNA quality control in Arabidopsis.

Authors:  Myung-Hee Kim; Jieun Jeon; Seulbee Lee; Jae Ho Lee; Lei Gao; Byung-Hoon Lee; Jeong Mee Park; Yun Ju Kim; June M Kwak
Journal:  Nat Plants       Date:  2019-11-18       Impact factor: 15.793

5.  Identification and molecular characterization of a trans-acting small interfering RNA producing locus regulating leaf rust responsive gene expression in wheat (Triticum aestivum L.).

Authors:  Summi Dutta; Dhananjay Kumar; Shailendra Jha; Kumble Vinod Prabhu; Manish Kumar; Kunal Mukhopadhyay
Journal:  Planta       Date:  2017-07-14       Impact factor: 4.116

6.  Arabidopsis DXO1 links RNA turnover and chloroplast function independently of its enzymatic activity.

Authors:  Aleksandra Kwasnik; Vivien Ya-Fan Wang; Michal Krzyszton; Agnieszka Gozdek; Monika Zakrzewska-Placzek; Karolina Stepniak; Jaroslaw Poznanski; Liang Tong; Joanna Kufel
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

Review 7.  Host factors against plant viruses.

Authors:  Hernan Garcia-Ruiz
Journal:  Mol Plant Pathol       Date:  2019-07-08       Impact factor: 5.663

8.  The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis.

Authors:  Hélène Scheer; Caroline de Almeida; Emilie Ferrier; Quentin Simonnot; Laure Poirier; David Pflieger; François M Sement; Sandrine Koechler; Christina Piermaria; Paweł Krawczyk; Seweryn Mroczek; Johana Chicher; Lauriane Kuhn; Andrzej Dziembowski; Philippe Hammann; Hélène Zuber; Dominique Gagliardi
Journal:  Nat Commun       Date:  2021-02-26       Impact factor: 14.919

9.  Analysis of mRNA-derived siRNAs in mutants of mRNA maturation and surveillance pathways in Arabidopsis thaliana.

Authors:  Michal Krzyszton; Joanna Kufel
Journal:  Sci Rep       Date:  2022-01-27       Impact factor: 4.996

10.  RNA decay is an antiviral defense in plants that is counteracted by viral RNA silencing suppressors.

Authors:  Fangfang Li; Aiming Wang
Journal:  PLoS Pathog       Date:  2018-08-03       Impact factor: 6.823

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.