Literature DB >> 28196418

Automated Algorithm for Detection of Transient Adenosine Release.

Ryan P Borman1, Ying Wang1, Michael D Nguyen1, Mallikarjunarao Ganesana1, Scott T Lee1, B Jill Venton1.   

Abstract

Spontaneous adenosine release events have been discovered in the brain that last only a few seconds. The identification of these adenosine events from fast-scan cyclic voltammetry (FSCV) data is difficult due to the random nature of adenosine release. In this study, we develop an algorithm that automatically identifies and characterizes adenosine transient features, including event time, concentration, and duration. Automating the data analysis reduces analysis time from 10 to 18 h to about 40 min per experiment. The algorithm identifies adenosine based on its two oxidation peaks, the time delay between them, and their current vs time peak ratios. In order to validate the program, four data sets from three independent researchers were analyzed by the algorithm and then compared to manual identification by an analyst. The algorithm resulted in 10 ± 4% false negatives and 9 ± 3% false positives. The specificity of the algorithm was verified by comparing calibration data for adenosine triphosphate (ATP), histamine, hydrogen peroxide, and pH changes and these analytes were not identified as adenosine. Stimulated histamine release in vivo was also not identified as adenosine. The code is modular in design and could be easily adjusted to detect features of spontaneous dopamine or other neurochemical transients in FSCV data.

Entities:  

Keywords:  Adenosine; automated analysis; brain slice; caudate; hippocampus; in vivo voltammetry

Mesh:

Substances:

Year:  2016        PMID: 28196418      PMCID: PMC5312768          DOI: 10.1021/acschemneuro.6b00262

Source DB:  PubMed          Journal:  ACS Chem Neurosci        ISSN: 1948-7193            Impact factor:   4.418


  24 in total

1.  High-throughput automated post-processing of separation data.

Authors:  Jonathan G Shackman; Christopher J Watson; Robert T Kennedy
Journal:  J Chromatogr A       Date:  2004-06-25       Impact factor: 4.759

2.  Subsecond detection of physiological adenosine concentrations using fast-scan cyclic voltammetry.

Authors:  B E Kumara Swamy; B Jill Venton
Journal:  Anal Chem       Date:  2007-01-15       Impact factor: 6.986

3.  Failure of Standard Training Sets in the Analysis of Fast-Scan Cyclic Voltammetry Data.

Authors:  Justin A Johnson; Nathan T Rodeberg; R Mark Wightman
Journal:  ACS Chem Neurosci       Date:  2016-01-27       Impact factor: 4.418

4.  Construction of Training Sets for Valid Calibration of in Vivo Cyclic Voltammetric Data by Principal Component Analysis.

Authors:  Nathan T Rodeberg; Justin A Johnson; Courtney M Cameron; Michael P Saddoris; Regina M Carelli; R Mark Wightman
Journal:  Anal Chem       Date:  2015-10-27       Impact factor: 6.986

5.  Computer-aided method for identification of major flavone/flavonol glycosides by high-performance liquid chromatography-diode array detection-tandem mass spectrometry (HPLC-DAD-MS/MS).

Authors:  Zhengfang Wang; Longze Lin; James M Harnly; Peter de B Harrington; Pei Chen
Journal:  Anal Bioanal Chem       Date:  2014-10-01       Impact factor: 4.142

Review 6.  Adenosine in the central nervous system: release mechanisms and extracellular concentrations.

Authors:  S Latini; F Pedata
Journal:  J Neurochem       Date:  2001-11       Impact factor: 5.372

7.  XLSearch: a Probabilistic Database Search Algorithm for Identifying Cross-Linked Peptides.

Authors:  Chao Ji; Sujun Li; James P Reilly; Predrag Radivojac; Haixu Tang
Journal:  J Proteome Res       Date:  2016-05-06       Impact factor: 4.466

8.  Transient adenosine efflux in the rat caudate-putamen.

Authors:  Sylvia Cechova; B Jill Venton
Journal:  J Neurochem       Date:  2008-01-10       Impact factor: 5.372

9.  Characterization of spontaneous, transient adenosine release in the caudate-putamen and prefrontal cortex.

Authors:  Michael D Nguyen; Scott T Lee; Ashley E Ross; Matthew Ryals; Vishesh I Choudhry; B Jill Venton
Journal:  PLoS One       Date:  2014-01-29       Impact factor: 3.240

10.  Sawhorse waveform voltammetry for selective detection of adenosine, ATP, and hydrogen peroxide.

Authors:  Ashley E Ross; B Jill Venton
Journal:  Anal Chem       Date:  2014-07-15       Impact factor: 6.986

View more
  14 in total

Review 1.  Fast-Scan Cyclic Voltammetry: Chemical Sensing in the Brain and Beyond.

Authors:  James G Roberts; Leslie A Sombers
Journal:  Anal Chem       Date:  2017-12-15       Impact factor: 6.986

Review 2.  Fundamentals of fast-scan cyclic voltammetry for dopamine detection.

Authors:  B Jill Venton; Qun Cao
Journal:  Analyst       Date:  2020-02-17       Impact factor: 4.616

Review 3.  Recent advances in fast-scan cyclic voltammetry.

Authors:  Pumidech Puthongkham; B Jill Venton
Journal:  Analyst       Date:  2020-02-17       Impact factor: 4.616

4.  Transient Adenosine Release Is Modulated by NMDA and GABAB Receptors.

Authors:  Michael D Nguyen; Ying Wang; Mallikarjunarao Ganesana; B Jill Venton
Journal:  ACS Chem Neurosci       Date:  2017-01-30       Impact factor: 4.418

5.  Regional Variations of Spontaneous, Transient Adenosine Release in Brain Slices.

Authors:  Scott T Lee; B Jill Venton
Journal:  ACS Chem Neurosci       Date:  2017-11-27       Impact factor: 4.418

6.  Structural Similarity Image Analysis for Detection of Adenosine and Dopamine in Fast-Scan Cyclic Voltammetry Color Plots.

Authors:  Pumidech Puthongkham; Julian Rocha; Jason R Borgus; Mallikarjunarao Ganesana; Ying Wang; Yuanyu Chang; Andreas Gahlmann; B Jill Venton
Journal:  Anal Chem       Date:  2020-07-21       Impact factor: 6.986

7.  Polymer Modified Carbon Fiber-Microelectrodes and Waveform Modifications Enhance Neurotransmitter Metabolite Detection.

Authors:  Dilpreet Raju; Alexander Mendoza; Pauline Wonnenberg; Sanuja Mohanaraj; Mulugeta Sarbanes; Carly Truong; Alexander G Zestos
Journal:  Anal Methods       Date:  2019-02-19       Impact factor: 2.896

8.  Complex sex and estrous cycle differences in spontaneous transient adenosine.

Authors:  Jason R Borgus; Pumidech Puthongkham; B Jill Venton
Journal:  J Neurochem       Date:  2020-03-02       Impact factor: 5.372

9.  CD73 or CD39 Deletion Reveals Different Mechanisms of Formation for Spontaneous and Mechanically Stimulated Adenosine and Sex Specific Compensations in ATP Degradation.

Authors:  Ying Wang; Jeffrey Copeland; Mimi Shin; Yuanyu Chang; B Jill Venton
Journal:  ACS Chem Neurosci       Date:  2020-03-04       Impact factor: 4.418

10.  A1 and A2A Receptors Modulate Spontaneous Adenosine but Not Mechanically Stimulated Adenosine in the Caudate.

Authors:  Yuanyu Chang; Ying Wang; B Jill Venton
Journal:  ACS Chem Neurosci       Date:  2020-10-07       Impact factor: 4.418

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.