Literature DB >> 28193867

Genetic signature of natural selection in first Americans.

Carlos Eduardo Amorim1, Kelly Nunes2, Diogo Meyer2, David Comas3, Maria Cátira Bortolini4, Francisco Mauro Salzano5, Tábita Hünemeier6.   

Abstract

When humans moved from Asia toward the Americas over 18,000 y ago and eventually peopled the New World they encountered a new environment with extreme climate conditions and distinct dietary resources. These environmental and dietary pressures may have led to instances of genetic adaptation with the potential to influence the phenotypic variation in extant Native American populations. An example of such an event is the evolution of the fatty acid desaturases (FADS) genes, which have been claimed to harbor signals of positive selection in Inuit populations due to adaptation to the cold Greenland Arctic climate and to a protein-rich diet. Because there was evidence of intercontinental variation in this genetic region, with indications of positive selection for its variants, we decided to compare the Inuit findings with other Native American data. Here, we use several lines of evidence to show that the signal of FADS-positive selection is not restricted to the Arctic but instead is broadly observed throughout the Americas. The shared signature of selection among populations living in such a diverse range of environments is likely due to a single and strong instance of local adaptation that took place in the common ancestral population before their entrance into the New World. These first Americans peopled the whole continent and spread this adaptive variant across a diverse set of environments.

Entities:  

Keywords:  first Americans; genetics; natural selection; peopling of America

Mesh:

Substances:

Year:  2017        PMID: 28193867      PMCID: PMC5338486          DOI: 10.1073/pnas.1620541114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Mitochondrial population genomics supports a single pre-Clovis origin with a coastal route for the peopling of the Americas.

Authors:  Nelson J R Fagundes; Ricardo Kanitz; Roberta Eckert; Ana C S Valls; Mauricio R Bogo; Francisco M Salzano; David Glenn Smith; Wilson A Silva; Marco A Zago; Andrea K Ribeiro-dos-Santos; Sidney E B Santos; Maria Luiza Petzl-Erler; Sandro L Bonatto
Journal:  Am J Hum Genet       Date:  2008-02-28       Impact factor: 11.025

2.  Reconciling pre-Columbian settlement hypotheses requires integrative, multidisciplinary, and model-bound approaches.

Authors:  Maria Cátira Bortolini; Rolando González-José; Sandro L Bonatto; Fabricio R Santos
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-07       Impact factor: 11.205

3.  Widespread signals of convergent adaptation to high altitude in Asia and america.

Authors:  Matthieu Foll; Oscar E Gaggiotti; Josephine T Daub; Alexandra Vatsiou; Laurent Excoffier
Journal:  Am J Hum Genet       Date:  2014-09-25       Impact factor: 11.025

4.  Sequencing of 50 human exomes reveals adaptation to high altitude.

Authors:  Xin Yi; Yu Liang; Emilia Huerta-Sanchez; Xin Jin; Zha Xi Ping Cuo; John E Pool; Xun Xu; Hui Jiang; Nicolas Vinckenbosch; Thorfinn Sand Korneliussen; Hancheng Zheng; Tao Liu; Weiming He; Kui Li; Ruibang Luo; Xifang Nie; Honglong Wu; Meiru Zhao; Hongzhi Cao; Jing Zou; Ying Shan; Shuzheng Li; Qi Yang; Peixiang Ni; Geng Tian; Junming Xu; Xiao Liu; Tao Jiang; Renhua Wu; Guangyu Zhou; Meifang Tang; Junjie Qin; Tong Wang; Shuijian Feng; Guohong Li; Jiangbai Luosang; Wei Wang; Fang Chen; Yading Wang; Xiaoguang Zheng; Zhuo Li; Zhuoma Bianba; Ge Yang; Xinping Wang; Shuhui Tang; Guoyi Gao; Yong Chen; Zhen Luo; Lamu Gusang; Zheng Cao; Qinghui Zhang; Weihan Ouyang; Xiaoli Ren; Huiqing Liang; Huisong Zheng; Yebo Huang; Jingxiang Li; Lars Bolund; Karsten Kristiansen; Yingrui Li; Yong Zhang; Xiuqing Zhang; Ruiqiang Li; Songgang Li; Huanming Yang; Rasmus Nielsen; Jun Wang; Jian Wang
Journal:  Science       Date:  2010-07-02       Impact factor: 47.728

5.  Anthropology. Out of Beringia?

Authors:  John F Hoffecker; Scott A Elias; Dennis H O'Rourke
Journal:  Science       Date:  2014-02-28       Impact factor: 47.728

6.  Quality control and quality assurance in genotypic data for genome-wide association studies.

Authors:  Cathy C Laurie; Kimberly F Doheny; Daniel B Mirel; Elizabeth W Pugh; Laura J Bierut; Tushar Bhangale; Frederick Boehm; Neil E Caporaso; Marilyn C Cornelis; Howard J Edenberg; Stacy B Gabriel; Emily L Harris; Frank B Hu; Kevin B Jacobs; Peter Kraft; Maria Teresa Landi; Thomas Lumley; Teri A Manolio; Caitlin McHugh; Ian Painter; Justin Paschall; John P Rice; Kenneth M Rice; Xiuwen Zheng; Bruce S Weir
Journal:  Genet Epidemiol       Date:  2010-09       Impact factor: 2.135

7.  Greenlandic Inuit show genetic signatures of diet and climate adaptation.

Authors:  Matteo Fumagalli; Ida Moltke; Niels Grarup; Fernando Racimo; Peter Bjerregaard; Marit E Jørgensen; Thorfinn S Korneliussen; Pascale Gerbault; Line Skotte; Allan Linneberg; Cramer Christensen; Ivan Brandslund; Torben Jørgensen; Emilia Huerta-Sánchez; Erik B Schmidt; Oluf Pedersen; Torben Hansen; Anders Albrechtsen; Rasmus Nielsen
Journal:  Science       Date:  2015-09-18       Impact factor: 47.728

8.  Genome-wide analysis of cold adaptation in indigenous Siberian populations.

Authors:  Alexia Cardona; Luca Pagani; Tiago Antao; Daniel J Lawson; Christina A Eichstaedt; Bryndis Yngvadottir; Ma Than Than Shwe; Joseph Wee; Irene Gallego Romero; Srilakshmi Raj; Mait Metspalu; Richard Villems; Eske Willerslev; Chris Tyler-Smith; Boris A Malyarchuk; Miroslava V Derenko; Toomas Kivisild
Journal:  PLoS One       Date:  2014-05-21       Impact factor: 3.240

9.  The genome of a Late Pleistocene human from a Clovis burial site in western Montana.

Authors:  Morten Rasmussen; Sarah L Anzick; Michael R Waters; Pontus Skoglund; Michael DeGiorgio; Thomas W Stafford; Simon Rasmussen; Ida Moltke; Anders Albrechtsen; Shane M Doyle; G David Poznik; Valborg Gudmundsdottir; Rachita Yadav; Anna-Sapfo Malaspinas; Samuel Stockton White; Morten E Allentoft; Omar E Cornejo; Kristiina Tambets; Anders Eriksson; Peter D Heintzman; Monika Karmin; Thorfinn Sand Korneliussen; David J Meltzer; Tracey L Pierre; Jesper Stenderup; Lauri Saag; Vera M Warmuth; Margarida C Lopes; Ripan S Malhi; Søren Brunak; Thomas Sicheritz-Ponten; Ian Barnes; Matthew Collins; Ludovic Orlando; Francois Balloux; Andrea Manica; Ramneek Gupta; Mait Metspalu; Carlos D Bustamante; Mattias Jakobsson; Rasmus Nielsen; Eske Willerslev
Journal:  Nature       Date:  2014-02-13       Impact factor: 49.962

10.  Beringian standstill and spread of Native American founders.

Authors:  Erika Tamm; Toomas Kivisild; Maere Reidla; Mait Metspalu; David Glenn Smith; Connie J Mulligan; Claudio M Bravi; Olga Rickards; Cristina Martinez-Labarga; Elsa K Khusnutdinova; Sardana A Fedorova; Maria V Golubenko; Vadim A Stepanov; Marina A Gubina; Sergey I Zhadanov; Ludmila P Ossipova; Larisa Damba; Mikhail I Voevoda; Jose E Dipierri; Richard Villems; Ripan S Malhi
Journal:  PLoS One       Date:  2007-09-05       Impact factor: 3.240

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  26 in total

1.  Prospective clinical trial examining the impact of genetic variation in FADS1 on the metabolism of linoleic acid- and ɣ-linolenic acid-containing botanical oils.

Authors:  Susan Sergeant; Brian Hallmark; Rasika A Mathias; Tammy L Mustin; Priscilla Ivester; Maggie L Bohannon; Ingo Ruczinski; Laurel Johnstone; Michael C Seeds; Floyd H Chilton
Journal:  Am J Clin Nutr       Date:  2020-05-01       Impact factor: 7.045

2.  Long-chain polyunsaturated fatty acids, gestation duration, and birth size: a Mendelian randomization study using fatty acid desaturase variants.

Authors:  Jonathan Y Bernard; Hong Pan; Izzuddin M Aris; Margarita Moreno-Betancur; Shu-E Soh; Fabian Yap; Kok Hian Tan; Lynette P Shek; Yap-Seng Chong; Peter D Gluckman; Philip C Calder; Keith M Godfrey; Mary Foong-Fong Chong; Michael S Kramer; Neerja Karnani; Yung Seng Lee
Journal:  Am J Clin Nutr       Date:  2018-07-01       Impact factor: 7.045

Review 3.  The Genetic Basis of Metabolic Disease.

Authors:  Inês Barroso; Mark I McCarthy
Journal:  Cell       Date:  2019-03-21       Impact factor: 41.582

4.  Infant Metabolome in Relation to Prenatal DHA Supplementation and Maternal Single-Nucleotide Polymorphism rs174602: Secondary Analysis of a Randomized Controlled Trial in Mexico.

Authors:  Sonia Tandon; Ines Gonzalez-Casanova; Albino Barraza-Villarreal; Isabelle Romieu; Hans Demmelmair; Dean P Jones; Berthold Koletzko; Aryeh D Stein; Usha Ramakrishnan
Journal:  J Nutr       Date:  2021-11-02       Impact factor: 4.687

5.  Disentangling Signatures of Selection Before and After European Colonization in Latin Americans.

Authors:  Javier Mendoza-Revilla; J Camilo Chacón-Duque; Macarena Fuentes-Guajardo; Louise Ormond; Ke Wang; Malena Hurtado; Valeria Villegas; Vanessa Granja; Victor Acuña-Alonzo; Claudia Jaramillo; William Arias; Rodrigo Barquera; Jorge Gómez-Valdés; Hugo Villamil-Ramírez; Caio C Silva de Cerqueira; Keyla M Badillo Rivera; Maria A Nieves-Colón; Christopher R Gignoux; Genevieve L Wojcik; Andrés Moreno-Estrada; Tábita Hünemeier; Virginia Ramallo; Lavinia Schuler-Faccini; Rolando Gonzalez-José; Maria-Cátira Bortolini; Samuel Canizales-Quinteros; Carla Gallo; Giovanni Poletti; Gabriel Bedoya; Francisco Rothhammer; David Balding; Matteo Fumagalli; Kaustubh Adhikari; Andrés Ruiz-Linares; Garrett Hellenthal
Journal:  Mol Biol Evol       Date:  2022-04-11       Impact factor: 8.800

6.  How natural selection shapes genetic differentiation in the MHC region: A case study with Native Americans.

Authors:  Kelly Nunes; Maria Helena Thomaz Maia; Eduardo José Melo Dos Santos; Sidney Emanuel Batista Dos Santos; João Farias Guerreiro; Maria Luiza Petzl-Erler; Gabriel Bedoya; Carla Gallo; Giovanni Poletti; Elena Llop; Luiza Tsuneto; Maria Cátira Bortolini; Francisco Rothhammer; Richard Single; Andrés Ruiz-Linares; Jorge Rocha; Diogo Meyer
Journal:  Hum Immunol       Date:  2021-03-31       Impact factor: 2.211

7.  Dietary adaptation of FADS genes in Europe varied across time and geography.

Authors:  Kaixiong Ye; Feng Gao; David Wang; Ofer Bar-Yosef; Alon Keinan
Journal:  Nat Ecol Evol       Date:  2017-05-26       Impact factor: 15.460

Review 8.  Precision Nutrition and Omega-3 Polyunsaturated Fatty Acids: A Case for Personalized Supplementation Approaches for the Prevention and Management of Human Diseases.

Authors:  Floyd H Chilton; Rahul Dutta; Lindsay M Reynolds; Susan Sergeant; Rasika A Mathias; Michael C Seeds
Journal:  Nutrients       Date:  2017-10-25       Impact factor: 5.717

9.  Combination of 247 Genome-Wide Association Studies Reveals High Cancer Risk as a Result of Evolutionary Adaptation.

Authors:  Konstantinos Voskarides
Journal:  Mol Biol Evol       Date:  2018-02-01       Impact factor: 16.240

10.  Environmental selection during the last ice age on the mother-to-infant transmission of vitamin D and fatty acids through breast milk.

Authors:  Leslea J Hlusko; Joshua P Carlson; George Chaplin; Scott A Elias; John F Hoffecker; Michaela Huffman; Nina G Jablonski; Tesla A Monson; Dennis H O'Rourke; Marin A Pilloud; G Richard Scott
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-23       Impact factor: 11.205

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