Literature DB >> 28191579

Synthetic mimics of biotin/(strept)avidin.

Wenqi Liu1, Soumen K Samanta, Bradley D Smith, Lyle Isaacs.   

Abstract

Biotin/(strept)avidin self-assembly is a powerful platform for nanoscale fabrication and capture with many different applications in science, medicine, and nanotechnology. However, biotin/(strept)avidin self-assembly has several well-recognized drawbacks that limit performance in certain technical areas and there is a need for synthetic mimics that can either become superior replacements or operational partners with bio-orthogonal recognition properties. The goal of this tutorial review is to describe the recent progress in making high affinity synthetic association partners that operate in water or biological media. The review starts with a background summary of biotin/(strept)avidin self-assembly and the current design rules for creating synthetic mimics. A series of case studies are presented that describe recent success using synthetic derivatives of cyclodextrins, cucurbiturils, and various organic cyclophanes such as calixarenes, deep cavitands, pillararenes, and tetralactams. In some cases, two complementary partners associate to produce a nanoscale complex and in other cases a ditopic host molecule is used to link two partners. The article concludes with a short discussion of future directions and likely challenges.

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Year:  2017        PMID: 28191579      PMCID: PMC5423825          DOI: 10.1039/c7cs00011a

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  47 in total

Review 1.  Binding affinities of host-guest, protein-ligand, and protein-transition-state complexes.

Authors:  K N Houk; Andrew G Leach; Susanna P Kim; Xiyun Zhang
Journal:  Angew Chem Int Ed Engl       Date:  2003-10-20       Impact factor: 15.336

Review 2.  Coiled coils: attractive protein folding motifs for the fabrication of self-assembled, responsive and bioactive materials.

Authors:  Bojana Apostolovic; Maarten Danial; Harm-Anton Klok
Journal:  Chem Soc Rev       Date:  2010-08-02       Impact factor: 54.564

3.  Complexation of ferrocene derivatives by the cucurbit[7]uril host: a comparative study of the cucurbituril and cyclodextrin host families.

Authors:  Woo Sung Jeon; Kwangyul Moon; Sang Hyun Park; Hyungpil Chun; Young Ho Ko; Jin Yong Lee; Eun Sung Lee; S Samal; N Selvapalam; Mikhail V Rekharsky; Vladimir Sindelar; David Sobransingh; Yoshihisa Inoue; Angel E Kaifer; Kimoon Kim
Journal:  J Am Chem Soc       Date:  2005-09-21       Impact factor: 15.419

4.  Straightforward self-assembly of porphyrin nanowires in water: harnessing adamantane/beta-cyclodextrin interactions.

Authors:  Maher Fathalla; Amelia Neuberger; Shao-Chun Li; Russell Schmehl; Ulrike Diebold; Janarthanan Jayawickramarajah
Journal:  J Am Chem Soc       Date:  2010-07-28       Impact factor: 15.419

5.  The cucurbit[n]uril family: prime components for self-sorting systems.

Authors:  Simin Liu; Christian Ruspic; Pritam Mukhopadhyay; Sriparna Chakrabarti; Peter Y Zavalij; Lyle Isaacs
Journal:  J Am Chem Soc       Date:  2005-11-16       Impact factor: 15.419

Review 6.  Avidin-biotin technology in targeted therapy.

Authors:  Hanna P Lesch; Minna U Kaikkonen; Jere T Pikkarainen; Seppo Ylä-Herttuala
Journal:  Expert Opin Drug Deliv       Date:  2010-05       Impact factor: 6.648

7.  Sequence-specific recognition and cooperative dimerization of N-terminal aromatic peptides in aqueous solution by a synthetic host.

Authors:  Lisa M Heitmann; Alexander B Taylor; P John Hart; Adam R Urbach
Journal:  J Am Chem Soc       Date:  2006-09-27       Impact factor: 15.419

8.  Recombinant NeutraLite avidin: a non-glycosylated, acidic mutant of chicken avidin that exhibits high affinity for biotin and low non-specific binding properties.

Authors:  A T Marttila; O H Laitinen; K J Airenne; T Kulik; E A Bayer; M Wilchek; M S Kulomaa
Journal:  FEBS Lett       Date:  2000-02-04       Impact factor: 4.124

9.  A synthetic host-guest system achieves avidin-biotin affinity by overcoming enthalpy-entropy compensation.

Authors:  Mikhail V Rekharsky; Tadashi Mori; Cheng Yang; Young Ho Ko; N Selvapalam; Hyunuk Kim; David Sobransingh; Angel E Kaifer; Simin Liu; Lyle Isaacs; Wei Chen; Sarvin Moghaddam; Michael K Gilson; Kimoon Kim; Yoshihisa Inoue
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-19       Impact factor: 11.205

10.  The origins of femtomolar protein-ligand binding: hydrogen-bond cooperativity and desolvation energetics in the biotin-(strept)avidin binding site.

Authors:  Jason DeChancie; K N Houk
Journal:  J Am Chem Soc       Date:  2007-04-07       Impact factor: 15.419

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  18 in total

1.  Cucurbit[7]uril Enables Multi-Stimuli-Responsive Release from the Self-Assembled Hydrophobic Phase of a Metal Organic Polyhedron.

Authors:  Soumen K Samanta; Jeffrey Quigley; Brittany Vinciguerra; Volker Briken; Lyle Isaacs
Journal:  J Am Chem Soc       Date:  2017-06-23       Impact factor: 15.419

2.  High affinity threading of a new tetralactam macrocycle in water by fluorescent deep-red and near-infrared squaraine dyes.

Authors:  Janel M Dempsey; Canjia Zhai; Hannah H McGarraugh; Cynthia L Schreiber; Shannon E Stoffel; Andrew Johnson; Bradley D Smith
Journal:  Chem Commun (Camb)       Date:  2019-10-08       Impact factor: 6.222

3.  Supramolecular capture of highly polar amidosquaraine dye in water with nanomolar affinity and large turn-on fluorescence.

Authors:  Madushani Dharmarwardana; Janel M Dempsey; Sasha Padilla-Coley; Tia S Jarvis; Kejia Shi; Kirk M Atkinson; Bradley D Smith
Journal:  Chem Commun (Camb)       Date:  2021-12-14       Impact factor: 6.222

4.  Supramolecular "Click Chemistry" for Targeting in the Body.

Authors:  Christopher J Addonizio; Brant D Gates; Matthew J Webber
Journal:  Bioconjug Chem       Date:  2021-08-20       Impact factor: 6.069

5.  Cell-surface Labeling via Bioorthogonal Host-Guest Chemistry.

Authors:  Anna Kataki-Anastasakou; Selena Hernandez; Ellen M Sletten
Journal:  ACS Chem Biol       Date:  2021-10-20       Impact factor: 4.634

6.  Recent Advances in Design of Fluorescence-Based Assays for High-Throughput Screening.

Authors:  Xiaoni Fang; Yongzan Zheng; Yaokai Duan; Yang Liu; Wenwan Zhong
Journal:  Anal Chem       Date:  2018-12-10       Impact factor: 6.986

Review 7.  Recent progress in enzymatic protein labelling techniques and their applications.

Authors:  Yi Zhang; Keun-Young Park; Kiall F Suazo; Mark D Distefano
Journal:  Chem Soc Rev       Date:  2018-09-27       Impact factor: 54.564

8.  Chaperone-Assisted Host-Guest Interactions Revealed by Single-Molecule Force Spectroscopy.

Authors:  Shankar Pandey; Dilanka V D Walpita Kankanamalage; Xiao Zhou; Changpeng Hu; Lyle Isaacs; Janarthanan Jayawickramarajah; Hanbin Mao
Journal:  J Am Chem Soc       Date:  2019-11-11       Impact factor: 15.419

9.  Carborane Guests for Cucurbit[7]uril Facilitate Strong Binding and On-Demand Removal.

Authors:  Anna Kataki-Anastasakou; Jonathan C Axtell; Selena Hernandez; Rafal M Dziedzic; Gary J Balaich; Arnold L Rheingold; Alexander M Spokoyny; Ellen M Sletten
Journal:  J Am Chem Soc       Date:  2020-11-30       Impact factor: 16.383

10.  Cancer-targeted design of bioresponsive prodrug with enhanced cellular uptake to achieve precise cancer therapy.

Authors:  Yuanwei Liang; Wei Huang; Delong Zeng; Xiaoting Huang; Leung Chan; Chaoming Mei; Pengju Feng; Choon-Hong Tan; Tianfeng Chen
Journal:  Drug Deliv       Date:  2018-11       Impact factor: 6.419

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